PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9NG515600.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 495aa    MW: 51891.9 Da    PI: 7.8187
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9NG515600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.64e-31213269259
                          --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          dDgynWrKYGqK vkg e+prsYY+Ct+agCpvkkkvers  ++++++i+Y+g+Hnh+
  Pavir.9NG515600.1.p 213 DDGYNWRKYGQKAVKGGEYPRSYYKCTYAGCPVKKKVERSG-EGHITQIIYRGQHNHQ 269
                          8***************************************9.***************8 PP
2WRKY104.17.7e-33381439159
                          ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          ldDgy+WrKYGqK+vkg+++prsYY+Ct++gC vkk++ers++dpk+v++tYeg+H h+
  Pavir.9NG515600.1.p 381 LDDGYRWRKYGQKVVKGNPHPRSYYKCTYQGCDVKKHIERSSQDPKAVITTYEGKHSHD 439
                          59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081124.122207271IPR003657WRKY domain
Gene3DG3DSA:2.20.25.806.5E-28209271IPR003657WRKY domain
SuperFamilySSF1182906.93E-25211271IPR003657WRKY domain
SMARTSM007741.1E-33212270IPR003657WRKY domain
PfamPF031065.0E-24213269IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.3E-36368441IPR003657WRKY domain
SuperFamilySSF1182902.48E-29373441IPR003657WRKY domain
PROSITE profilePS5081137.172376441IPR003657WRKY domain
SMARTSM007741.0E-38381440IPR003657WRKY domain
PfamPF031061.7E-25382439IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 495 aa     Download sequence    Send to blast
MAAHDAPATA AAGDGARRPP PRPTLSLPPR SAVESLFAGA SSAGAGAAET SPGPLTLAAA  60
FFPDAPSPAF HGSFTQLLVG AIGSPAAAPA VPTPPSPFAV PPGLSPTALL GSPGLFSPTG  120
SFEMSHQQAL AQVTAQAVHS QFNMINHSDF SIPFSSTTTL ASTSQPQHVN PANVTSTQEI  180
STLPSHTGKK SIESNEISQG LQNSAPAFDK PADDGYNWRK YGQKAVKGGE YPRSYYKCTY  240
AGCPVKKKVE RSGEGHITQI IYRGQHNHQR PPKRRSKDGG GLLIEAGDFH ENEDASTRSE  300
PGSQNHSGKH GGSNDGIAGP PVSRRREGDE QLSGSSDSEE EEDAEQKVGN GDAGGANANR  360
RHVPTPAQRI IVQTTSEVDL LDDGYRWRKY GQKVVKGNPH PRSYYKCTYQ GCDVKKHIER  420
SSQDPKAVIT TYEGKHSHDV PAARNSSHAA AANANAASST SLPHRGQNSA SSSGRGADVS  480
SASSMLLKEE TEIT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A5e-38213442878Probable WRKY transcription factor 4
2lex_A5e-38213442878Probable WRKY transcription factor 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1269274RPPKRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.11790.0callus| leaf| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9NG515600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004983974.30.0probable WRKY transcription factor 4 isoform X1
TrEMBLK4A8W10.0K4A8W1_SETIT; Uncharacterized protein
STRINGPavir.Ia03037.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP134538122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13960.13e-79WRKY DNA-binding protein 4