PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9NG515600.2.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 441aa    MW: 45843.2 Da    PI: 7.2237
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9NG515600.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY31.92.6e-101852152859
                          -STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY  28 tsagCpvkkkversaedpkvveitYegeHnhe 59 
                          +++gCpvkkkvers  ++++++i+Y+g+Hnh+
  Pavir.9NG515600.2.p 185 SHTGCPVKKKVERSG-EGHITQIIYRGQHNHQ 215
                          688***********9.***************8 PP
2WRKY104.36.5e-33327385159
                          ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          ldDgy+WrKYGqK+vkg+++prsYY+Ct++gC vkk++ers++dpk+v++tYeg+H h+
  Pavir.9NG515600.2.p 327 LDDGYRWRKYGQKVVKGNPHPRSYYKCTYQGCDVKKHIERSSQDPKAVITTYEGKHSHD 385
                          59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007741.8E-4185216IPR003657WRKY domain
SuperFamilySSF1182901.12E-5185217IPR003657WRKY domain
Gene3DG3DSA:2.20.25.805.2E-7185217IPR003657WRKY domain
PfamPF031062.8E-6186215IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.8E-36314387IPR003657WRKY domain
SuperFamilySSF1182902.09E-29319387IPR003657WRKY domain
PROSITE profilePS5081137.172322387IPR003657WRKY domain
SMARTSM007741.0E-38327386IPR003657WRKY domain
PfamPF031061.5E-25328385IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 441 aa     Download sequence    Send to blast
MAAHDAPATA AAGDGARRPP PRPTLSLPPR SAVESLFAGA SSAGAGAAET SPGPLTLAAA  60
FFPDAPSPAF HGSFTQLLVG AIGSPAAAPA VPTPPSPFAV PPGLSPTALL GSPGLFSPTG  120
SFEMSHQQAL AQVTAQAVHS QFNMINHSDF SIPFSSTTTL ASTSQPQHVN PANVTSTQEI  180
STLPSHTGCP VKKKVERSGE GHITQIIYRG QHNHQRPPKR RSKDGGGLLI EAGDFHENED  240
ASTRSEPGSQ NHSGKHGGSN DGIAGPPVSR RREGDEQLSG SSDSEEEEDA EQKVGNGDAG  300
GANANRRHVP TPAQRIIVQT TSEVDLLDDG YRWRKYGQKV VKGNPHPRSY YKCTYQGCDV  360
KKHIERSSQD PKAVITTYEG KHSHDVPAAR NSSHAAAANA NAASSTSLPH RGQNSASSSG  420
RGADVSSASS MLLKEETEIT *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-38318388878Probable WRKY transcription factor 4
2lex_A1e-38318388878Probable WRKY transcription factor 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1215220RPPKRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.11790.0callus| leaf| root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: In young, mature and senescent leaves. {ECO:0000269|PubMed:11722756}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Has a positive role in resistance to necrotrophic pathogens (e.g. Botrytis cinerea), but a negative effect on plant resistance to biotrophic pathogens (e.g. Pseudomonas syringae). {ECO:0000269|PubMed:18570649, ECO:0000269|PubMed:22219184}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9NG515600.2.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By biotic and abiotic stresses such as pathogen infection (e.g. Botrytis cinerea and Pseudomonas syringae), salicylic acid (SA), jasmonic acid (JA), ethylene (ACC), liquid infiltration or spraying, and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756, ECO:0000269|PubMed:18570649}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004983974.30.0probable WRKY transcription factor 4 isoform X1
SwissprotQ9XI909e-82WRKY4_ARATH; Probable WRKY transcription factor 4
TrEMBLK4A8W10.0K4A8W1_SETIT; Uncharacterized protein
STRINGSi035317m0.0(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13960.16e-53WRKY DNA-binding protein 4
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]