PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9NG518000.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C2H2
Protein Properties Length: 401aa    MW: 43281.2 Da    PI: 6.5082
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9NG518000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.30.0011255277123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          y+Cp Cg+ F +   L  H  +H
  Pavir.9NG518000.1.p 255 YECPGCGRAFQSYQALGGHRASH 277
                          99********9999888888777 PP
2zf-C2H210.80.0015336358123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++Cp+C k+F +   L  H r+H
  Pavir.9NG518000.1.p 336 FECPICFKVFGSGQALGGHKRSH 358
                          89**************9999999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.46E-71436No hitNo description
SMARTSM003550.61436IPR015880Zinc finger, C2H2-like
PfamPF139128.1E-51436IPR007087Zinc finger, C2H2
PROSITE profilePS501579.2861437IPR007087Zinc finger, C2H2
PROSITE patternPS0002801636IPR007087Zinc finger, C2H2
SuperFamilySSF576673.46E-7250277No hitNo description
PfamPF139127.9E-11254279IPR007087Zinc finger, C2H2
SMARTSM003550.21255277IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.492255282IPR007087Zinc finger, C2H2
PROSITE patternPS000280257277IPR007087Zinc finger, C2H2
PROSITE profilePS501579.598336358IPR007087Zinc finger, C2H2
SMARTSM003550.15336358IPR015880Zinc finger, C2H2-like
PfamPF139124.2E-11336359IPR007087Zinc finger, C2H2
PROSITE patternPS000280338358IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 401 aa     Download sequence    Send to blast
MGDAAVLSSS ATRHSCKVCR KGFPCGRSLG GHMRSHSLAE VETAVEDDAD DNGEEQQQQR  60
RGSDCLMVPA AGGYGLRENP KKTRRLSGLD GGGRQDECGH GDRGELLPPC APEVGRERRH  120
APGAGMEAEA EREQEDAMLI PTEPAVGLMP APRRRRRSMR VPAPAPPPAF DKEPEDVALC  180
LIMLSRDILH RRDSTVAGAE YSPEKGRRRR DYHHDTDSDD ASALFQYADV EISTKTNNKR  240
KPNRSLAGDE KRARYECPGC GRAFQSYQAL GGHRASHKRI NSNCSIAKVA PDQAELSIET  300
NASFNTASPD ADYAADVAHN TAVVALKAKP QKAIKFECPI CFKVFGSGQA LGGHKRSHLI  360
AGELYERAHA DGDAGIDEPE QPMIADGFLD LNLPAPGAED *
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9NG518000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025792036.10.0zinc finger protein ZAT4-like
TrEMBLA0A3L6TTF00.0A0A3L6TTF0_PANMI; Zinc finger protein ZAT4-like
STRINGPavir.Ia03028.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38613573
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.16e-23C2H2-like zinc finger protein