PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.9NG536700.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

GRAS

Protein Properties

Length: 231aa MW: 24246.2 Da PI: 5.7304

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.9NG536700.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	82.3	8.2e-26	63	225	197	374
GRAS 197 kpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvE 286 gEal+V+l+++l + ++er ++L+ v++l+P++vv++e +a +++ + +f+ le + +++s++a + + r E Pavir.9NG536700.1.p 63 AAGEALVVCLQFRLGHAA------ADERADILSKVRGLNPELVVLSELDAGG-DGTAAGEFTARLELLWRFLESTSAAF----KGRDGEE 141 349*******999997......455789*************99986.88889*************8886....5555555 PP GRAS 287 rellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374 r+ll+ e+ v++ a e Wrer+ +aGF++++++ +a+++a++llrk++ +++++ g++ l Wk++p+ ++S Wr Pavir.9NG536700.1.p 142 RRLLEAEAGTSVTADAAG-----EGRDAWRERMAAAGFEEAAFGGEAVESARSLLRKYDgGWEMSASGAAGAVALRWKGQPVSFCSLWR 225 566666666666666665.....66669***************************888888888999999************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	12.36	1	204	IPR005202	Transcription factor GRAS
Pfam	PF03514	2.8E-23	63	225	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 231 aa Download sequence Send to blast
MKPRSGNQST PTRHESRDPT VIIGSPPFPS ATSAMLNTRL TSINLHLAIS RAGSLDSVHG 60 FAAAGEALVV CLQFRLGHAA ADERADILSK VRGLNPELVV LSELDAGGDG TAAGEFTARL 120 ELLWRFLEST SAAFKGRDGE ERRLLEAEAG TSVTADAAGE GRDAWRERMA AAGFEEAAFG 180 GEAVESARSL LRKYDGGWEM SASGAAGAVA LRWKGQPVSF CSLWRPACSG *

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.9NG536700.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ728015	1e-158	KJ728015.1 Zea mays clone pUT6151 GRAS transcription factor (GRAS74) gene, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025792043.1	1e-110	nodulation-signaling pathway 1 protein-like
TrEMBL	A0A1E5VYC7	1e-109	A0A1E5VYC7_9POAL; Nodulation-signaling pathway 1 protein
STRING	GRMZM2G110067_P01	5e-99	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6135	28	54

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13840.1	3e-37	GRAS family protein

Link Out ? help Back to Top
Phytozome	Pavir.9NG536700.1.p