PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.9NG557400.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

GeBP

Protein Properties

Length: 372aa MW: 39957 Da PI: 6.5321

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.9NG557400.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	98.3	7e-31	58	163	2	97
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgk..spsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkk.......aksgkepsfs 81 lfqrlw++eDeiv+L+++ +f+a++g+ +++ d++ fye ++++++ ++k+qlveKirrLK+K+++++k + g ++f+ Pavir.9NG557400.1.p 58 LFQRLWTDEDEIVILRAFAEFTAQRGTsfASHQyDTTPFYEDMRRRLHTGFTKNQLVEKIRRLKRKYRNCRKYrncverlRVAGAAFTFR 147 79***********************8867778******************************9999867776666789999* PP DUF573 82 kehdqkifelskkiWg 97 ++h+q ife+++ iW+ Pavir.9NG557400.1.p 148 SPHEQAIFEIARTIWR 163 ***************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	9.1E-28	59	162	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 372 aa Download sequence Send to blast
MVSSSFPDAD AYGNGDSDDL DFPVDPHPTP VFSSPAAAPA SVSAAPPPGA GAGERRPLFQ 60 RLWTDEDEIV ILRAFAEFTA QRGTSFASHQ YDTTPFYEDM RRRLHTGFTK NQLVEKIRRL 120 KRKYRNCRKY RNCVERLRVA GAAFTFRSPH EQAIFEIART IWRPDSDKHG RDSDDEAAAN 180 AHDGPLALDA NGESTKSPTS RPRRGGRRRR TGDFPADADA ETLALPPPPP MPVMAEDALP 240 SFPAAGMPAM DAGVGVGSIS IDPSAGLPAA MSAAAAAVTG GSTAENPILS ALFKEMVRAM 300 LSIGGGVTAA PLGLEPPPAI AGMPMEGEKW RQQRIRELEV YLRRIDLLQD QARAALEELR 360 SAPAARGGMN T*

Sequence ? help Back to Top

Protein Sequence Length: 372 aa Download sequence Send to blast

MVSSSFPDAD AYGNGDSDDL DFPVDPHPTP VFSSPAAAPA SVSAAPPPGA GAGERRPLFQ  60
RLWTDEDEIV ILRAFAEFTA QRGTSFASHQ YDTTPFYEDM RRRLHTGFTK NQLVEKIRRL  120
KRKYRNCRKY RNCVERLRVA GAAFTFRSPH EQAIFEIART IWRPDSDKHG RDSDDEAAAN  180
AHDGPLALDA NGESTKSPTS RPRRGGRRRR TGDFPADADA ETLALPPPPP MPVMAEDALP  240
SFPAAGMPAM DAGVGVGSIS IDPSAGLPAA MSAAAAAVTG GSTAENPILS ALFKEMVRAM  300
LSIGGGVTAA PLGLEPPPAI AGMPMEGEKW RQQRIRELEV YLRRIDLLQD QARAALEELR  360
SAPAARGGMN T*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.9NG557400.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025794014.1	0.0	probable transcription factor At3g04930
TrEMBL	A0A2T7CC96	0.0	A0A2T7CC96_9POAL; Uncharacterized protein
TrEMBL	A0A2T8I4R3	0.0	A0A2T8I4R3_9POAL; Uncharacterized protein
STRING	Pavir.J23796.1.p	1e-175	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP974	37	123

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04930.2	3e-22	DNA-binding storekeeper protein-related transcriptional regulator

Link Out ? help Back to Top
Phytozome	Pavir.9NG557400.1.p