PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9NG558100.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 449aa    MW: 49783.1 Da    PI: 10.0105
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9NG558100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM72.41.2e-22311641127
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka.eekewyfFskrdkkyatgkrknratk.sgyWkatgk 88 
                          lppG++F Ptd elv +yL++++++++l+l  ++ + +i++++P++L +k+++ +e++w+fF++r++k+ +g+r+nrat  +g     g+
  Pavir.9NG558100.1.p  31 LPPGYHFLPTDAELVLHYLRPRLANQPLPL-PIFIDEHILRYHPSRLVEKYREyGEDRWFFFVRRERKHDSGNRPNRATLgNGHRALIGR 119
                          79***************************9.5555669*********8544443778********************7652676667777 PP

                  NAM  89 dkevlskkgelvglkktLvfy........kgrapkgektdWvmheyr 127
                           ++++  + + +  k+             +g+a+kg kt+W+m ey+
  Pavir.9NG558100.1.p 120 VRTLVFYEASRTKKKNRQ--EpgppppveEGKANKGAKTEWTMYEYE 164
                          777666333222222222..2457777778****************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.05E-3125195IPR003441NAC domain
PROSITE profilePS5100530.25531195IPR003441NAC domain
PfamPF023651.5E-1432164IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 449 aa     Download sequence    Send to blast
MKLRRRRRPQ LPPFPLPLLH GYHLRRFVLN LPPGYHFLPT DAELVLHYLR PRLANQPLPL  60
PIFIDEHILR YHPSRLVEKY REYGEDRWFF FVRRERKHDS GNRPNRATLG NGHRALIGRV  120
RTLVFYEASR TKKKNRQEPG PPPPVEEGKA NKGAKTEWTM YEYESLTPEE EESVATWADG  180
TARMNPIVLC TIQKKKQRQE EQQQQQQSKE ACKVGETKKR AINSKAKGKG QDAGGRKKRK  240
RTAAEPQEED HAQRTPTETE AVVQEQASTR VPDFTVDRSP AALPPPPPPP PPQETIMAAA  300
AGGDNDNYIS VHSSFAATMS SSSQFQFQAP PFAQGFLPCI LAPLGGGNSC SIMSPSITWM  360
DLQTEPPPPP PEELSTASRI FLPHSGHNAA KIAPSVHPHG FGPGLSSSSY GFAGGDTHRL  420
SAGTGYRDLP RHSFPSQPSY GVGGGSNA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A4e-212920113174Stress-induced transcription factor NAC1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
128LRRRRRP
2217239KKRAINSKAKGKGQDAGGRKKRK
3224237KAKGKGQDAGGRKK
4235240RKKRKR
5236241KKRKRT
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9NG558100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJF2827561e-113JF282756.1 Panicum virgatum clone B09_PVCAG-1 microsatellite sequence.
GenBankJF2828061e-113JF282806.1 Panicum virgatum clone B06_PVCAG-2 microsatellite sequence.
GenBankJF2828961e-113JF282896.1 Panicum virgatum clone F06_PVCAG-4 microsatellite sequence.
GenBankJF2829331e-113JF282933.1 Panicum virgatum clone C04_PVCAG-6 microsatellite sequence.
GenBankJF2829641e-113JF282964.1 Panicum virgatum clone D02_PVCAG-7 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A3L6TT891e-142A0A3L6TT89_PANMI; Uncharacterized protein
STRINGPavir.Ia03295.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP158671313
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04070.26e-21NAC domain containing protein 47