PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9NG559400.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family HSF
Protein Properties Length: 316aa    MW: 35266.7 Da    PI: 6.2906
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9NG559400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind112.13.8e-35381302103
                          HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS
         HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 
                          Fl+k++++++d+ +++++sw e+g +fvv+ + efa+++Lp+yFkh+nf+SFvRQLn+YgF+k+  ++         weF+++ Fkkg k
  Pavir.9NG559400.1.p  38 FLTKTFQLVDDPCTDHVVSWGEDGATFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVADR---------WEFANEFFKKGAK 118
                          9****************************************************************999.........************* PP

                          XXXXXXXXXXXX CS
         HSF_DNA-bind  92 ellekikrkkse 103
                          +ll++i+r+ks+
  Pavir.9NG559400.1.p 119 HLLSEIHRRKSS 130
                          *********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.105.2E-3728121IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.1E-5734127IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467854.44E-3335127IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004476.7E-3138127IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.4E-203861IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.4E-207688IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434077101IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.4E-2089101IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MAFLVERCGS GGGEMAVSMD VETSSQSHAA KPVVPAPFLT KTFQLVDDPC TDHVVSWGED  60
GATFVVWRPP EFARDLLPNY FKHNNFSSFV RQLNTYGFRK IVADRWEFAN EFFKKGAKHL  120
LSEIHRRKSS SCSQPPPPLQ PLPPHQPYLS LFSPPHPSPP AYYRVQEEDH GGGKDFLATL  180
SEDNRELRRR NSLLLSELAH MRRLYNDIIY FLQNHVEPVP PPPPSATGCR LVELGSADDD  240
ASPPTTRKPR GDDDDEEAPV RLFGVRLNDS KKRKAQAAEL LEETGDGDHC DGIGDGELAT  300
VTTMAMAMTK EVRRR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A6e-223413017123Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9NG559400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2432490.0AC243249.1 Panicum virgatum clone PV_ABa094-D05, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025797236.11e-159heat stress transcription factor B-4d-like
SwissprotQ10KX81e-107HFB4D_ORYSJ; Heat stress transcription factor B-4d
TrEMBLA0A2T7CC941e-158A0A2T7CC94_9POAL; Uncharacterized protein
STRINGPavir.Ib01755.1.p1e-152(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.11e-60heat shock transcription factor B4