PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9NG564200.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bZIP
Protein Properties Length: 448aa    MW: 47175.6 Da    PI: 8.6662
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9NG564200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_143.56.8e-14363410552
                          CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleel 52 
                          +r+rr++kNRe+A rsR+RK+a++ eLe +   L++eN +Lk e +++
  Pavir.9NG564200.1.p 363 RRQRRMIKNRESAARSRARKQAYTVELEAELNHLKEENARLKAEENTI 410
                          79****************************************887665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003388.9E-15359423IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.059361406IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1708.5E-14363408No hitNo description
PfamPF001702.9E-11363410IPR004827Basic-leucine zipper domain
SuperFamilySSF579597.74E-11363409No hitNo description
CDDcd147072.12E-24363404No hitNo description
PROSITE patternPS000360366381IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0010152Biological Processpollen maturation
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 448 aa     Download sequence    Send to blast
MHLGFLDLEP VLITALCSGM QAINKDGVRR SSRAVRGKQR RSRGGIVMAS EMSKNVKVLD  60
EQEVTSHQRG DQGVGARPGG AAAEDQAQAD QLARQASIMS LTLEELQSSL CEPGRNFGSM  120
NMDEFVANIW NAEEFQAATG GCKQDAAEQE AAATGVGGNG GSGLVRQGSF ALPPPLSRKT  180
VEEVWAEINQ GPADAGAHPA PQAVVQPQAG SGGVAASGRQ VTLGEMTLED FLVKAGVVRG  240
AFAAGYGQAV GMVPAAPMGH MPQGQLAAPM MYQVAPANAV FPVMGDGMGY PNGYPGAMAV  300
VPPPPPSQCV APAVSPGSSD GMSAMTKAEM MSCIGNGGMV RNGGGARKRD FPEDGCTEKT  360
VERRQRRMIK NRESAARSRA RKQAYTVELE AELNHLKEEN ARLKAEENTI LLSKKKMLVE  420
KMIEQARENV SAKKSGRGLR RCGSAKW*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, leaves and panicles (PubMed:17604002). Expressed in seeds (PubMed:21055780). {ECO:0000269|PubMed:17604002, ECO:0000269|PubMed:21055780}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that possesses transactivation activity in yeast (PubMed:17604002, PubMed:21055780, PubMed:18236009). Involved in abscisic acid (ABA) signaling pathway. Binds to the G-box motif 5'-CACGTG-3' of TRAB1 gene promoter (PubMed:17604002). Involved in the regulation of pollen maturation. May act as negative regulator of salt stress response (PubMed:18236009). Together with PYL5, PP2C30 and SAPK2, is part of an ABA signaling unit that modulates seed germination and early seedling growth (PubMed:22071266). {ECO:0000269|PubMed:17604002, ECO:0000269|PubMed:18236009, ECO:0000269|PubMed:21055780, ECO:0000269|PubMed:22071266}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9NG564200.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) (PubMed:21055780, PubMed:18236009, PubMed:22071266). Induced by salt stress. Down-regulated by cold and drought stresses (PubMed:18236009). {ECO:0000269|PubMed:18236009, ECO:0000269|PubMed:21055780, ECO:0000269|PubMed:22071266}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF3147010.0KF314701.1 Setaria italica clone SiABRE hypothetical protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025818302.10.0bZIP transcription factor ABI5 homolog
SwissprotQ8RZ351e-175ABI5_ORYSJ; bZIP transcription factor ABI5 homolog
TrEMBLA0A2T7DE440.0A0A2T7DE44_9POAL; Uncharacterized protein
STRINGPavir.J35078.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38303558
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56850.16e-29ABA-responsive element binding protein 3
Publications ? help Back to Top
  1. Zou M,Guan Y,Ren H,Zhang F,Chen F
    A bZIP transcription factor, OsABI5, is involved in rice fertility and stress tolerance.
    Plant Mol. Biol., 2008. 66(6): p. 675-83
    [PMID:18236009]
  2. Kim H, et al.
    A rice orthologue of the ABA receptor, OsPYL/RCAR5, is a positive regulator of the ABA signal transduction pathway in seed germination and early seedling growth.
    J. Exp. Bot., 2012. 63(2): p. 1013-24
    [PMID:22071266]
  3. Bhatnagar N, et al.
    The protein phosphatase 2C clade A protein OsPP2C51 positively regulates seed germination by directly inactivating OsbZIP10.
    Plant Mol. Biol., 2017. 93(4-5): p. 389-401
    [PMID:28000033]