PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.9NG581800.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

NAC

Protein Properties

Length: 330aa MW: 35518.4 Da PI: 4.5109

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.9NG581800.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	22.3	3.7e-07	21	102	28	94
NAM 28 leleevikevdiykvePwdLpk...........kvkaeekewyfFskrdkkyatgk....rknr.atksgyWkatgkdkevls 94 +++ +++++vd++++ P dL + ++ ++ wyf+++++ k+++gk r++ a ++ W++ + k+v+ Pavir.9NG581800.1.p 21 VDF-TFVHRVDVCSAAPADLVAnlepvpgtdlaGDEGYSSVWYFYCPKRYKNTQGKpsghRQRAiAGGDACWHSETRPKPVKG 102 455.679***********7447788877543112234499****999766555244443344678**99999975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.62E-7	14	104	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 330 aa Download sequence Send to blast
MAAADDASSV ALLRGLRSGA VDFTFVHRVD VCSAAPADLV ANLEPVPGTD LAGDEGYSSV 60 WYFYCPKRYK NTQGKPSGHR QRAIAGGDAC WHSETRPKPV KGLAGATLCN LSYGRKEGSS 120 RSFNRLSLVI LSRQGEVEGV VVDIHQPHVP TSSEQAAAQC SSASKRKATA DHPQARPSKI 180 SHAQTCASNY SFVDQEFYHQ MQEPLLTDDQ MGMPMPVCVD YESLFPAEEE QDTLVTGEQL 240 LQNTLALVAA EEEQSQQNTL VTPEEEQLQQ NTPFTMDGLL GGPGYGEYGG CSWSTQVTMD 300 ELFSRSSGCY GTPTAMAPPD AGFFEGLAF*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.9NG581800.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002463549.1	8e-39	uncharacterized protein LOC8079646
TrEMBL	A0A2T7BZK1	1e-169	A0A2T7BZK1_9POAL; Uncharacterized protein
STRING	Pavir.Fb02148.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4574	6	32

Link Out ? help Back to Top
Phytozome	Pavir.9NG581800.1.p