PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9NG607200.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bZIP
Protein Properties Length: 237aa    MW: 24777.7 Da    PI: 10.6256
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9NG607200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_147.24.8e-15166207546
                          CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLk 46 
                          +r +r++kNRe+A rsR+RK+a+++ Le k+++Le+eN++L+
  Pavir.9NG607200.1.p 166 RRKKRMIKNRESAARSRARKQAYTKDLEIKIAQLEEENERLR 207
                          799*************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003382.7E-9162230IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.277164207IPR004827Basic-leucine zipper domain
PfamPF001702.5E-12166207IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.38E-10166208No hitNo description
Gene3DG3DSA:1.20.5.1702.9E-14166207No hitNo description
CDDcd147073.33E-19166207No hitNo description
PROSITE patternPS000360169184IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MAAKAMSSHG SGGGGGGGGG AASRQGSVCS LAFGDADAQL HGVNLDDLLR AGRKTVDEVW  60
RDIQGAAACP RAQMTLEDFL SRAAGTGAPA GARGWAHQLH QPAPAPQLGQ HHHPAVGRPV  120
ARPLGVGAGP ALDAPYYDGH EGGGAAAAGG KRAGPERGVA ERSNERRKKR MIKNRESAAR  180
SRARKQAYTK DLEIKIAQLE EENERLRGHK APEPVLQHVP PQEVKNQLRR TNSANF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9NG607200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3614232e-31AK361423.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1140E18.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025797011.11e-128ABSCISIC ACID-INSENSITIVE 5-like protein 2
TrEMBLA0A2T7CDI21e-127A0A2T7CDI2_9POAL; Uncharacterized protein
STRINGPavir.Ib01001.1.p1e-112(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44413367
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56850.11e-29ABA-responsive element binding protein 3