PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9NG615100.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bZIP
Protein Properties Length: 150aa    MW: 16179.1 Da    PI: 10.2184
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9NG615100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_132.51.9e-10116148133
                          XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLee 33 
                          e+elk errkq+NRe+ rrsR+ K++e+e+Le 
  Pavir.9NG615100.1.p 116 ERELKGERRKQSNRESTRRSRLHKQQECEKLEA 148
                          89*****************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1703.0E-7110148No hitNo description
PfamPF001706.9E-8116147IPR004827Basic-leucine zipper domain
CDDcd147022.41E-8122148No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 150 aa     Download sequence    Send to blast
MQQHMMAAAA GAPYGTPMPF HLLPSAKRRK SSSANPSQAT TMQDAAAETG SAAKRSYAGK  60
LSVSTTEMAA ISNARSNLNI GIDLWNNSPI KAETSGQIQI NAAAPCHDAP LSQMDERELK  120
GERRKQSNRE STRRSRLHKQ QECEKLEAN*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.354624e-38callus
Functional Description ? help Back to Top
Source Description
UniProtInteracts specifically with the 8-bp sequence 5'-CACGTGGC-3'in the abscisic acid response element (ABARE). Also binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9NG615100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025792641.15e-62DNA-binding protein EMBP-1-like isoform X2
SwissprotP250321e-18EMBP1_WHEAT; DNA-binding protein EMBP-1
TrEMBLA0A2T7BZD11e-63A0A2T7BZD1_9POAL; Uncharacterized protein
STRINGPavir.J09275.1.p6e-59(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21603692
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35530.11e-15basic region/leucine zipper transcription factor 16