PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9NG620200.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB_related
Protein Properties Length: 249aa    MW: 28511.9 Da    PI: 7.875
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9NG620200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.11.1e-14140186147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          r+ WTteE+ +++++ +++G g+Wk I+r++ +++t+ q+  + qky
  Pavir.9NG620200.1.p 140 RLCWTTEEHRQFLRGLHMYGRGDWKNISRHFVTTKTPAQVSRHAQKY 186
                          789*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.4E-9133188IPR009057Homeodomain-like
PROSITE profilePS5129417.227135191IPR017930Myb domain
SuperFamilySSF466892.51E-15137192IPR009057Homeodomain-like
SMARTSM007174.6E-12139189IPR001005SANT/Myb domain
TIGRFAMsTIGR015571.1E-13139189IPR006447Myb domain, plants
PfamPF002491.5E-11141186IPR001005SANT/Myb domain
CDDcd001676.23E-10143187No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MDPKFNGEWS AFEINMVKSL IASHNPNNNY ADDTNRKHNS IVNQLQAWFP LKEKHQVIKL  60
YVELVVEMTM QAGQIGNQSM VAINNLVNNN YGIAVEDPTM DNMDMSRASL TGKKLEATRM  120
VEEVPHQQVI IPQQERRHKR LCWTTEEHRQ FLRGLHMYGR GDWKNISRHF VTTKTPAQVS  180
RHAQKYFHRV ERTTEKQRYS INDIGLNDAK PWVPNNSSIG FASATSSDDD YDPDPTTSTS  240
RGPVEQVT*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9NG620200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004959144.11e-103transcription factor SRM1
TrEMBLA0A3L6SUI21e-129A0A3L6SUI2_PANMI; Protein REVEILLE 4-like
STRINGPavir.J00201.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP84230133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.19e-24MYB family protein