PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9NG638700.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 793aa    MW: 88779.9 Da    PI: 4.8185
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9NG638700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM64.82.6e-20722011128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......leleevikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratks 80 
                          lp+G++F+P+d +l+  +L+++v + +      +  +++i++vd      +++P+d+p  v+++ +  yfF++r ++y+++  +n +   
  Pavir.9NG638700.1.p  72 LPRGVEFNPSDGDLL-WHLAAEVGNGQaerhpfI--NKFITSVDddrgFSYTHPRDIP-GVRQDGHAAYFFHRRFESYSNEGDANIS--- 154
                          699************.789999988886664331..23466664455599********.667788999**********998887774... PP

                  NAM  81 gyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                            Wk+ g++++++  +g+l g+k+++v+y  + +++ +++tdW +h+y++
  Pavir.9NG638700.1.p 155 --WKKVGTSRSIFL-DGTLQGCKEVFVLYadTMSDKGSQQTDWRLHQYHI 201
                          ..************.999***********6444666778*********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.63E-2664219IPR003441NAC domain
PROSITE profilePS5100523.972219IPR003441NAC domain
PfamPF023652.8E-873201IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 793 aa     Download sequence    Send to blast
MATGFSSLIS HLDSSPDPDH CPLSGRGRLT VQPPAPAPAR AESSPRLPDR CEASVDTGRF  60
DGASLQQSWP GLPRGVEFNP SDGDLLWHLA AEVGNGQAER HPFINKFITS VDDDRGFSYT  120
HPRDIPGVRQ DGHAAYFFHR RFESYSNEGD ANISWKKVGT SRSIFLDGTL QGCKEVFVLY  180
ADTMSDKGSQ QTDWRLHQYH IRNTVKDEEE LVLSKIFFES RDNLCELAEE ARIEAELDVS  240
TPDDSREKCT TCSNPGVYTE TDELDHISLK ERYRILLADK STCPATISAR ESSKTYSKRN  300
QEVTAYKEDI CNMLQEISSA PPIIESNPMD DCNSSRLLCE DDSGFLSISG ISSHTGPSVC  360
EVGCSHDPVE GNQVGGTATC GSESSELIVR KQGGLLADVK LEPALEGYEI DPSESPQENP  420
AQAEGSVPSL GVKDELNECD LPGLCEKISF SSRKRRKRKT TSYSNEKMLE EDTYTNDEGI  480
AYCSRRRRMK KTATDSIEKA LDEDAPGLLQ ILLTRGIAVQ EIKLYGAEED NEMIPDSSES  540
SFEDLENVIA NIFPKRTSLL KLSIARHEKG EKAIYCLSCL ISLIEQSRYL QFRDCPVEWG  600
WCRDLQSFIF VFRSHNRFLL SINLCPIFIV KMVGRLVLMV PLFILLHRIV LERPEYGYAT  660
YFFEVVQSLS IEWQIRRLVI AMKLSGCGRT ALIENRPLLV GEDLTEGEAH VLEEYGWIRN  720
TGLGTMVNYR DRVVHDRWTE KNVSDWRAKI GKLLMTGYAE GQSVTIHGPK KVANLLEATG  780
EAEIDIKLED PF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1452458RKRRKRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.111221e-159callus| leaf| root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9NG638700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025795332.10.0uncharacterized protein LOC112875626 isoform X1
TrEMBLA0A3L6S3X50.0A0A3L6S3X5_PANMI; Uncharacterized protein
STRINGPavir.Ib00786.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74793239
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25580.11e-38NAC family protein