PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9NG646400.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family B3
Protein Properties Length: 262aa    MW: 29877.9 Da    PI: 7.1534
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9NG646400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B352.59.1e-17151101100
                          EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                          ffk+l+p ++ +   l+lp kfa+e g    ++ +l+l   e    W+v++  + k+g + l++GWk+F++a++L++g  +vF++d+   
  Pavir.9NG646400.1.p  15 FFKILLPGMYEE--SLRLPAKFARELGAR--RELKLRLAGgEMMPLWDVEVFADEKRGDMHLGRGWKKFARAHDLRDGYLLVFRYDD-GA 99 
                          888895555554..59**********966..545688777555599*****999999999************************987.78 PP

                          E..EEEEE-SS CS
                   B3  90 felvvkvfrks 100
                          ++l+v+vf++s
  Pavir.9NG646400.1.p 100 ASLTVMVFDRS 110
                          889*****985 PP
2B3452e-141522261287
                          HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                   B3  12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                          +++ l +p +f ++hg+  ++ ++l+     grsW+v+l+   r +++r+ ++ GW +F+ +ngL++gD++ F+++++
  Pavir.9NG646400.1.p 152 QNQYLNVPVEFQDAHGYARRRRVELR---MGGRSWSVNLKRgkRVRGDRTAFKYGWHQFCVDNGLEVGDTCFFRVIRE 226
                          6678999********99988876666...478*******8777777777*************************8874 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086313.11213110IPR003340B3 DNA binding domain
CDDcd100171.18E-1813108No hitNo description
SuperFamilySSF1019368.44E-1714116IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.0E-1615112IPR015300DNA-binding pseudobarrel domain
PfamPF023624.9E-1415109IPR003340B3 DNA binding domain
SMARTSM010191.0E-1315110IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.1E-23135254IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.06E-15137227IPR015300DNA-binding pseudobarrel domain
CDDcd100173.02E-12138227No hitNo description
SMARTSM010190.0025139231IPR003340B3 DNA binding domain
PROSITE profilePS5086311.871141256IPR003340B3 DNA binding domain
PfamPF023621.5E-11152226IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MEEEMAGLSL GDFEFFKILL PGMYEESLRL PAKFARELGA RRELKLRLAG GEMMPLWDVE  60
VFADEKRGDM HLGRGWKKFA RAHDLRDGYL LVFRYDDGAA SLTVMVFDRS TCRKQYAHAG  120
AAAGPAGRRS LAIAEPSHFA VSLRQCNLGT KQNQYLNVPV EFQDAHGYAR RRRVELRMGG  180
RSWSVNLKRG KRVRGDRTAF KYGWHQFCVD NGLEVGDTCF FRVIREGACA DDDEEEWEDE  240
CEDDEHVLKV EVRKKNGTML T*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9NG646400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025796563.11e-158B3 domain-containing protein Os03g0212300-like
RefseqXP_025796564.11e-158B3 domain-containing protein Os03g0212300-like
SwissprotQ10Q263e-92Y3123_ORYSJ; B3 domain-containing protein Os03g0212300
TrEMBLA0A2S3IT121e-156A0A2S3IT12_9POAL; Uncharacterized protein
STRINGPavir.Ia04671.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP47483264
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31690.12e-13B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]