PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9NG664000.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C2H2
Protein Properties Length: 438aa    MW: 45771.2 Da    PI: 9.1451
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9NG664000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.90.00017199222123
                          EEETTTTEEESSHHHHHHHHHH.T CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                          ++C+ Cg++  r+ +L+ H+ + H
  Pavir.9NG664000.1.p 199 FPCKVCGEVLGRPQLLELHQAMkH 222
                          89******************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS000280201222IPR007087Zinc finger, C2H2
SuperFamilySSF563992.04E-11224436No hitNo description
Gene3DG3DSA:3.90.228.104.5E-8224436IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 438 aa     Download sequence    Send to blast
MAGGGGGSSL LRGFLSLFFL LFLHIGHAGC CFSPGAAAPA REEDEAADAE DGGKVGGGGG  60
SNKRRKISPL IFSPAASSSA VTNGSARARR GHASSVAASL RFYLHRIFSS SGAKDGAVAG  120
REEQAAATTV SSPLAQSLAP QASASVVLST PSSPCASSPF MSPLSVRFLS ATPVPSSPQK  180
LLQANRQSSR SFAARGDVFP CKVCGEVLGR PQLLELHQAM KHSLSELTHL DSSMNIIRMI  240
FLAGWKPAAS GAAEAPAVRR ILRIHHNPRA LARFEEYRDL VRARAARRRG EGGAAVVEER  300
CVADGNERLR FHCSTMLCSL GGGGVCGSPY CCVCSTLRHG FAGKQADVDG IATYASAWAA  360
HASLPEDVER EFAFLQVRRA MLVCRVVAGR VGRGAADDKV AYDSMVPARA GAGGDDVELL  420
VFNPRAVLPC FVILYSS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15159GGKVGGGGG
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.200990.0root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9NG664000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0664350.0BT066435.1 Zea mays full-length cDNA clone ZM_BFc0163N15 mRNA, complete cds.
GenBankBT0845420.0BT084542.1 Zea mays full-length cDNA clone ZM_BFb0129H01 mRNA, complete cds.
GenBankEU9546110.0EU954611.1 Zea mays clone 1473866 nucleic acid binding protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021313429.10.0uncharacterized protein LOC8054291
TrEMBLA0A1E5UPY00.0A0A1E5UPY0_9POAL; Uncharacterized protein
STRINGPavir.J37415.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP105173037
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G29660.12e-35C2H2 family protein