PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.9NG676500.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

bZIP

Protein Properties

Length: 165aa MW: 17935.8 Da PI: 11.3771

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.9NG676500.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	29.2	2e-09	20	66	3	49
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkel 49 e +r r+ +NR++Ar+sR ++++ ++ L+ +++ L eN+a++ + Pavir.9NG676500.1.p 20 EERRRNRMTSNRLSARKSRMKRQQHVDDLTAEAERLRRENEAMRAGA 66 567889*************************************9765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	1.1E-8	16	66	No hit	No description
SMART	SM00338	3.5E-10	18	82	IPR004827	Basic-leucine zipper domain
Pfam	PF07716	1.5E-4	19	64	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.22	20	83	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	5.75E-8	22	64	No hit	No description
CDD	cd14702	3.87E-13	23	72	No hit	No description
PROSITE pattern	PS00036	0	26	40	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 165 aa Download sequence Send to blast
MVAAAAAPQG ARRAAVATEE ERRRNRMTSN RLSARKSRMK RQQHVDDLTA EAERLRRENE 60 AMRAGAGEAL RRGRALEQEN RVLAAHARQL CAALLLRNSQ LRLLGGVAGV PLDVPGVPDH 120 LVQLYGGPHQ MPAMPLAPPP PLQLPLEIQM LLQPDVMDAV GMLV*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.9NG676500.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ728266	1e-134	KJ728266.1 Zea mays clone pUT6543 bZIP transcription factor (bZIP24) gene, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025792835.1	6e-84	bZIP transcription factor 53-like
TrEMBL	A0A3L6S7C2	1e-84	A0A3L6S7C2_PANMI; BZIP transcription factor 53-like
STRING	Pavir.Ia03528.1.p	1e-110	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12504	28	37

Link Out ? help Back to Top
Phytozome	Pavir.9NG676500.1.p