PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9NG687800.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family LBD
Protein Properties Length: 233aa    MW: 24684.8 Da    PI: 6.8424
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9NG687800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260130.47.7e-41631621100
               DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                          +CaaCk+lrr+Ca++Cvlapyfp ++p+kf  +h++FGasn++kll++lpe+ r da+ss+vyeAear+rdPvyG++g + +lq+q ++l
  Pavir.9NG687800.1.p  63 PCAACKILRRRCADGCVLAPYFPPTEPAKFTTAHRVFGASNIIKLLQDLPESSRADAVSSMVYEAEARLRDPVYGCAGAVCRLQKQANEL 152
                          7***************************************************************************************** PP

               DUF260  91 kaelallkee 100
                          k++la++++ 
  Pavir.9NG687800.1.p 153 KVQLARAQAD 162
                          *****99875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089125.46362163IPR004883Lateral organ boundaries, LOB
PfamPF031955.4E-4163160IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MDYGSGSTGT GTTATPPPPP QQQYSSCRSV SPPSRVSSCS PPPAPPPAVQ VVGNAPPTVV  60
LSPCAACKIL RRRCADGCVL APYFPPTEPA KFTTAHRVFG ASNIIKLLQD LPESSRADAV  120
SSMVYEAEAR LRDPVYGCAG AVCRLQKQAN ELKVQLARAQ ADLLNAQAQH ANLLALVCVE  180
MANRRDSHHQ QQHPSPPLVD GGGDFGAAAY HAFYDSDLDS ATWPDHEAQL WT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A5e-416216510113LOB family transfactor Ramosa2.1
5ly0_B5e-416216510113LOB family transfactor Ramosa2.1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9NG687800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9539371e-175EU953937.1 Zea mays clone 1449845 LOB domain protein 11 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004987050.21e-123LOB domain-containing protein 1
SwissprotQ9LQR03e-63LBD1_ARATH; LOB domain-containing protein 1
TrEMBLA0A368SSE31e-122A0A368SSE3_SETIT; Uncharacterized protein
STRINGPavir.Ia03612.1.p1e-170(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26453790
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07900.11e-54LOB domain-containing protein 1