PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9NG694600.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C2H2
Protein Properties Length: 191aa    MW: 20133.8 Da    PI: 6.79
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9NG694600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.70.00175072123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         ++C+ C++ F++   L  H  +H
  Pavir.9NG694600.1.p 50 FECKTCNRQFPSFQALGGHRASH 72
                         89**********99999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.88E-848117No hitNo description
PfamPF139123.2E-134974IPR007087Zinc finger, C2H2
SMARTSM003550.165072IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.8275077IPR007087Zinc finger, C2H2
PROSITE patternPS0002805272IPR007087Zinc finger, C2H2
PfamPF139124.7E-994119IPR007087Zinc finger, C2H2
PROSITE profilePS501578.8595122IPR007087Zinc finger, C2H2
SMARTSM003554.895117IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028097117IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MAYGKRSRQQ AEEMIWLPEG ADVARFLLLF SGHHQHHASP DPASAPERVF ECKTCNRQFP  60
SFQALGGHRA SHKKPRLADG VDGGAAAEPP KPKVHGCSIC GLEFAIGQAL GGHMRRHRAA  120
DQADGASSPG LGLGLSLGSG LGPEDVGRKA APAVELALDL NAVPELEEEP DRAKLGLPVE  180
FPVAVVDFLR *
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9NG694600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1370692e-73AC137069.2 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0009C19, from chromosome 3, complete sequence.
GenBankAK1113382e-73AK111338.1 Oryza sativa Japonica Group cDNA clone:002-181-F05, full insert sequence.
GenBankAP0149592e-73AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBankCP0126112e-73CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
GenBankCT8331992e-73CT833199.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN044A18, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025796675.11e-114zinc finger protein ZAT11
TrEMBLA0A2S3IRU71e-112A0A2S3IRU7_9POAL; Uncharacterized protein
TrEMBLA0A2T7CE711e-112A0A2T7CE71_9POAL; Uncharacterized protein
STRINGPavir.Ia03651.1.p1e-134(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP50137157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28710.11e-26C2H2 family protein