PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9NG694800.3.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 260aa    MW: 28212.8 Da    PI: 8.1607
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9NG694800.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH15.43.3e-051882271155
                          HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH  11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +R +++ +++  L++l+ +      +K + a++L++A  +Ik+L+
  Pavir.9NG694800.3.p 188 KRSQKLGDKITALQQLVSPY-----GKTDTASVLREAATCIKHLH 227
                          6889999**********999.....9*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.353177226IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.1E-6188236IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.71E-4188231No hitNo description
SuperFamilySSF474592.88E-9188241IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MSMLEEIQTA TQGGEDLRSR WWRSRLDRSD TMWNCSAPHP FLLPYGDDYV RCEGSSSPAG  60
AVGLDRILPA EYDLCHSLNL SPSLHGLQTP TLFAMNGSEN YLGIGANPIY SGETRPVFSQ  120
FSCTQPTAAA HLVRWTAAGE TMTGDGSRLR GSKRLKTTTA AATAQDPHHG LRCNVKPTRN  180
QSMKAPCKRS QKLGDKITAL QQLVSPYGKT DTASVLREAA TCIKHLHEQI QILTASYPAI  240
SSPPSEQVPC SGNERCNHA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1147155RLRGSKRLK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9NG694800.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025792107.11e-137uncharacterized protein LOC112873346
TrEMBLA0A3L6TN371e-142A0A3L6TN37_PANMI; Uncharacterized protein
STRINGPavir.J38538.1.p1e-159(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05710.52e-15bHLH family protein