PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.9NG713700.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

Trihelix

Protein Properties

Length: 198aa MW: 21806.9 Da PI: 11.3197

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.9NG713700.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	37.7	5.3e-12	15	98	2	85
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm......rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 W++ e+ +Li+a ++r r + l+ ++W++ ++++ + r f+r+ +qC+ +++ l+kryk++ +++ + s +p++++l Pavir.9NG713700.1.p 15 WSDGETSTLIDAWGAAHQRRRPRGLRLKDWRAAASAVnaqraaAGRRFNRTRVQCQTRIRTLKKRYKEELARQPS------SGWPHLSRL 98 ***************************************999999******************99888775......457777776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	1.5E-18	14	100	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 198 aa Download sequence Send to blast
MPIRKPAPES ASGNWSDGET STLIDAWGAA HQRRRPRGLR LKDWRAAASA VNAQRAAAGR 60 RFNRTRVQCQ TRIRTLKKRY KEELARQPSS GWPHLSRLRA FLADPDGPPP GFPARAPARV 120 KREVKAEEGG CSGVAASWTV PRRPRDAAAR STGFCPAAVV TKLAEVYERV ELARIGAEKE 180 KMEMEVQQAM LDAVKVE*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.9NG713700.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025792102.1	1e-104	uncharacterized protein LOC112873338
TrEMBL	A0A2S3ISL9	1e-106	A0A2S3ISL9_9POAL; Uncharacterized protein
STRING	Pavir.J18525.1.p	1e-139	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP14753	12	13

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G58630.1	3e-07	sequence-specific DNA binding transcription factors

Link Out ? help Back to Top
Phytozome	Pavir.9NG713700.1.p