PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9NG726300.2.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NF-YA
Protein Properties Length: 235aa    MW: 25890.7 Da    PI: 9.3445
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9NG726300.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA104.78.1e-33132188158
            CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                          +ep+YVNaKQy++Il+RRq Rakle+e+kl  ksrkpylheSRh hA++R+Rg++GrF
  Pavir.9NG726300.2.p 132 EEPIYVNAKQYHAILRRRQLRAKLEAENKL-VKSRKPYLHESRHLHAMKRARGTSGRF 188
                          69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005212.1E-37130191IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115238.687131191IPR001289Nuclear transcription factor Y subunit A
PfamPF020452.4E-28133188IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006161.1E-23134156IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860136156IPR018362CCAAT-binding factor, conserved site
PRINTSPR006161.1E-23165188IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010262Biological Processsomatic embryogenesis
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MRQNGTIMIQ FGHQMPDYDS PATQSTSESH QEVSGMSEGS LNDHNDQSGN HDGYSKSDEN  60
KMMSALSLGN PETAYAHPKP DRSQSFAISY PYADSYYGGA VAAYGQHAIM HPQLVGMMPS  120
SRVPLPIEPA AEEPIYVNAK QYHAILRRRQ LRAKLEAENK LVKSRKPYLH ESRHLHAMKR  180
ARGTSGRFLN TKQQSDSPGG SSDAQRMPAN GGLFTKHEHS HPPGDRHYHA RGGA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A4e-23132198267NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.200080.0callus| root| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in flowers and siliques. {ECO:0000269|PubMed:11250072}.
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9NG726300.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025792633.11e-163nuclear transcription factor Y subunit A-7-like isoform X3
SwissprotQ9LVJ77e-43NFYA6_ARATH; Nuclear transcription factor Y subunit A-6
TrEMBLA0A2S3ITS61e-164A0A2S3ITS6_9POAL; Uncharacterized protein
STRINGPavir.Ia04345.1.p1e-171(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14020.12e-41nuclear factor Y, subunit A6
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]