PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9NG729300.3.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family HD-ZIP
Protein Properties Length: 235aa    MW: 26222.6 Da    PI: 7.7681
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9NG729300.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.54.6e-18113166356
                          --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                          k+++++ eq+++Le+ Fe  +++  e++ +LA+ lgL+ rqV +WFqNrRa++k
  Pavir.9NG729300.3.p 113 KKRRLNVEQVRTLEKNFELGNKLEPERKLQLARALGLQPRQVAIWFQNRRARWK 166
                          4568999**********************************************9 PP
2HD-ZIP_I/II128.23.4e-41112200189
          HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 
                          ekkrrl+ eqv++LE++Fe  +kLeperK +lar+Lglqprqva+WFqnrRAR+ktkqlEkdy+aLkr++da+k++n++L +++++L++
  Pavir.9NG729300.3.p 112 EKKRRLNVEQVRTLEKNFELGNKLEPERKLQLARALGLQPRQVAIWFQNRRARWKTKQLEKDYNALKRQLDAVKADNDALLSHNKKLQA 200
                          69*************************************************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.4E-1994169IPR009057Homeodomain-like
SuperFamilySSF466899.41E-20103170IPR009057Homeodomain-like
PROSITE profilePS5007117.346108168IPR001356Homeobox domain
SMARTSM003891.3E-17111172IPR001356Homeobox domain
CDDcd000861.58E-16113169No hitNo description
PfamPF000461.8E-15113166IPR001356Homeobox domain
PRINTSPR000319.1E-6139148IPR000047Helix-turn-helix motif
PROSITE patternPS000270143166IPR017970Homeobox, conserved site
PRINTSPR000319.1E-6148164IPR000047Helix-turn-helix motif
PfamPF021831.3E-11168201IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MRPMASNGMA SSPSPFFPPN FLLQMQQTPP DHDPQEHHHH HEHHLPPPLH PHHNPFLPSS  60
QCPSLQDFRG MAPMLGKRPM YGAEVGGGDE ANCGGGGGNE DELSDDGSQA GEKKRRLNVE  120
QVRTLEKNFE LGNKLEPERK LQLARALGLQ PRQVAIWFQN RRARWKTKQL EKDYNALKRQ  180
LDAVKADNDA LLSHNKKLQA EPGSSCAREP VIRTTLLIDP DRLLVVASIE FPAQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1160168RRARWKTKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.185940.0stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaf blades and panicles. {ECO:0000269|PubMed:17999151}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9NG729300.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9664900.0EU966490.1 Zea mays clone 294849 homeobox-leucine zipper protein HAT7 mRNA, complete cds.
GenBankKJ7285060.0KJ728506.1 Zea mays clone pUT6811 HB transcription factor (HB102) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002465782.11e-118homeobox-leucine zipper protein HOX21
SwissprotA2XD082e-83HOX21_ORYSI; Homeobox-leucine zipper protein HOX21
TrEMBLA0A1D6JQ501e-118A0A1D6JQ50_MAIZE; Homeobox-transcription factor 102
TrEMBLC5WVY21e-116C5WVY2_SORBI; Uncharacterized protein
STRINGPavir.Ia04323.1.p1e-145(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69780.13e-56HD-ZIP family protein