PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9NG735300.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family TALE
Protein Properties Length: 573aa    MW: 61439.9 Da    PI: 6.3157
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9NG735300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox26.31.3e-083443811954
                          HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
             Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                          Fe   ++yp+ +e+  LA+++gL+  qV++WF N R +
  Pavir.9NG735300.1.p 344 FEHflHPYPKDSEKLMLARQTGLSRGQVSNWFINARVR 381
                          554459******************************88 PP
2BELL108.73.6e-35206277172
                 BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                          erq+lq+k + L+ ll++Vd++Y++y++q+q+v+ssF+avag g+a+pYt+lAl++iSrhFr+L+dai  q+
  Pavir.9NG735300.1.p 206 ERQDLQNKVSALMALLDQVDRKYRHYRNQMQMVMSSFDAVAGAGAARPYTALALQTISRHFRSLRDAIGAQV 277
                          799*****************************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.4E-46136275IPR006563POX domain
PfamPF075263.6E-47142273IPR006563POX domain
PROSITE profilePS5007112.001322385IPR001356Homeobox domain
SMARTSM003891.7E-9325389IPR001356Homeobox domain
CDDcd000863.10E-12325386No hitNo description
SuperFamilySSF466894.28E-17326392IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.3E-27328391IPR009057Homeodomain-like
PfamPF059204.4E-17342381IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 573 aa     Download sequence    Send to blast
MATFFSASTD QRDLAAAGDM SFHHYTTSNP YSDTPTGGLI PFPATIMSEG HVAHGGDGRD  60
EPTSFLNARD GPSSGAEMGL QTQLLMANAS AAQHQGLSLS LGTQGVPVES LYQYRQAGMA  120
AASLLSPGQT TTASRNAQSI YIQNSKYLKA ARELLDEVVN VRDAIKRKGD KNHQSKDSGE  180
GKDAEKSEEK ADEHEGNSSA ELTPSERQDL QNKVSALMAL LDQVDRKYRH YRNQMQMVMS  240
SFDAVAGAGA ARPYTALALQ TISRHFRSLR DAIGAQVQSL RRSLGEKDSS AQGGGLSRLR  300
YIDQQLRQQR AMQQFGMMQQ PQHAWRPQRG LPESAVSVLR AWLFEHFLHP YPKDSEKLML  360
ARQTGLSRGQ VSNWFINARV RLWKPMIEEM YKEEFGAEMD SHSSSENAGN KGKDEAISSE  420
DHDEFQSPSS AAKHGAAAGH LSAFKSEAIG GMDAGGVGLS GLAGGAIGSY ATSLNLGAVG  480
NGSSSLLQDA LAHHHGDARF VAYGDMGGLG GGGYDGGSVS LTLGLQHCND AGTVQAEQQG  540
LLYGNAGDFE FMNGSEDRQR FGSSQLLHDF VA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5bng_A2e-17331389159Homeobox protein Meis2
5bng_B2e-17331389159Homeobox protein Meis2
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.131750.0root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9NG735300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7284970.0KJ728497.1 Zea mays clone pUT6802 HB transcription factor (HB64) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025797172.10.0BEL1-like homeodomain protein 7
TrEMBLA0A1E5W1C90.0A0A1E5W1C9_9POAL; BEL1-like homeodomain protein 7
STRINGPavir.Ia04290.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP90138131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16400.11e-111BEL1-like homeodomain 7