PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9NG739600.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family HSF
Protein Properties Length: 336aa    MW: 37968.6 Da    PI: 4.799
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9NG739600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind1041.3e-32511412101
                          HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS
         HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 
                          Fl+k+++++ d+++++++sw ++gnsfvv+d++ fa  +Lp++Fkh+nf+SFvRQLn+YgF+k++ ++         weF+++ F +g++
  Pavir.9NG739600.1.p  51 FLTKTFDLVADPATDQVVSWGRTGNSFVVWDPHVFAAVLLPRFFKHNNFSSFVRQLNTYGFRKIDPDR---------WEFANEGFLRGQR 131
                          9****************************************************************999.........************* PP

                          XXXXXXXXXX CS
         HSF_DNA-bind  92 ellekikrkk 101
                          +ll+ ikr++
  Pavir.9NG739600.1.p 132 QLLRLIKRRR 141
                          ********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467851.63E-3447140IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.104.8E-3747140IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004153.6E-5947140IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.7E-195174IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004473.0E-3051140IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.7E-1989101IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434090114IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.7E-19102114IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MDPLLPGVVT VKEEWPPSSP PPEEEVEDMD AAPAGAPRPM EGLHEVGPPP FLTKTFDLVA  60
DPATDQVVSW GRTGNSFVVW DPHVFAAVLL PRFFKHNNFS SFVRQLNTYG FRKIDPDRWE  120
FANEGFLRGQ RQLLRLIKRR RPPSYLPGPQ QQALGSCLEV GQFGGGLDEE MDRLRRDKNI  180
LLAEVGKLRQ EQQSTRADMR AMEERLQHAE QKQVQMMGFL ARALQNPDFF QQLAQQQERR  240
RELEDAFSSR KRRRPPIDAA PFEEASGRPR DDEPPLLFRG CGGFEAGTSE LENLALNIQG  300
LGKRRQDEKQ APGGGGGETA ELTDEFWEEL TDEFC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A1e-254914018120Heat shock factor protein 1
5d5u_B1e-254914027129Heat shock factor protein 1
5d5v_B1e-254914027129Heat shock factor protein 1
5d5v_D1e-254914027129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1134139RLIKRR
2238253RRRELEDAFSSRKRRR
3249253RKRRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9NG739600.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat stress. {ECO:0000269|PubMed:18064488}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025792158.10.0uncharacterized protein LOC112873415
SwissprotQ8H7Y61e-153HFA2D_ORYSJ; Heat stress transcription factor A-2d
TrEMBLA0A1E5WLF60.0A0A1E5WLF6_9POAL; Heat stress transcription factor A-2d
STRINGPavir.J15979.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30837231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.13e-78heat shock transcription factor A6B