PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9NG777700.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family B3
Protein Properties Length: 296aa    MW: 32548.7 Da    PI: 9.8877
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9NG777700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B398.73.7e-3129133199
                          EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-. CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld. 85 
                          f+kv tpsdv+k++rlv+pk++ae++       +e++  l++ed++g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F +  
  Pavir.9NG777700.1.p  29 FDKVVTPSDVGKLNRLVIPKQHAEKFfpldAAANEKGLLLSFEDRTGKPWRFRYSYWNSSQSYVMTKGWSRFVKEKRLDAGDTVSFGRGv 118
                          89***************************955556888*************************************************665 PP

                          SS.SEE..EEEEE-S CS
                   B3  86 gr.sefelvvkvfrk 99 
                          g+  +++l++ ++r+
  Pavir.9NG777700.1.p 119 GEaARGRLFIDWRRR 133
                          8889999***99997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.2E-4024137IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.59E-2926134IPR015300DNA-binding pseudobarrel domain
CDDcd100175.22E-2627114No hitNo description
SMARTSM010197.7E-2129134IPR003340B3 DNA binding domain
PfamPF023625.0E-2829133IPR003340B3 DNA binding domain
PROSITE profilePS5086314.36729134IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009908Biological Processflower development
GO:0048366Biological Processleaf development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MEFTAGPAPS GGGEERAQQA VAVEKEHMFD KVVTPSDVGK LNRLVIPKQH AEKFFPLDAA  60
ANEKGLLLSF EDRTGKPWRF RYSYWNSSQS YVMTKGWSRF VKEKRLDAGD TVSFGRGVGE  120
AARGRLFIDW RRRPDPPVHY HRLPLPSIPY APWAHHPAAL GARTTTVLHL PPSPSSLCYD  180
YDYDSRRRHT YGAPGSRQQL LFYRPHQQTM VLDSVPVRIP TTPGQHAEPP PPVASSASKR  240
VRLFGVNLDC AGSEEESGGG RAPPPTQAQP LQLPSPPSSS SSSSGKARCS LNLDL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A2e-64241343114B3 domain-containing transcription factor NGA1
5os9_B2e-64241343114B3 domain-containing transcription factor NGA1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9NG777700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2175821e-150AC217582.2 Oryza punctata clone OP__Ba0071K23, complete sequence.
GenBankAC2260771e-150AC226077.2 Oryza minuta clone OM__Ba0121K01, complete sequence.
GenBankAC2365461e-150AC236546.1 Oryza minuta clone OM__Ba0198F03, complete sequence.
GenBankKJ7270011e-150KJ727001.1 Zea mays clone pUT3977 ABI3VP1 transcription factor (ABI8) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025798126.11e-171B3 domain-containing protein Os03g0120900-like
SwissprotQ8LMR91e-109Y3209_ORYSJ; B3 domain-containing protein Os03g0120900
TrEMBLA0A2S3IUV81e-170A0A2S3IUV8_9POAL; Uncharacterized protein
STRINGPavir.Ia04549.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58337168
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.15e-71B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]