PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9NG798700.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 287aa    MW: 31203 Da    PI: 6.7881
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9NG798700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.51.3e-16104153255
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                          +y+GVr+++ +grW+AeIrdp+    + +r +lg+f +aeeAa+a+++ +++++g
  Pavir.9NG798700.1.p 104 KYRGVRYRR-SGRWAAEIRDPR----QgRRAWLGTFCSAEEAARAYDREARRIRG 153
                          8******99.7*********94....25************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003808.2E-33104167IPR001471AP2/ERF domain
PfamPF008475.6E-10104153IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.8E-28104162IPR001471AP2/ERF domain
CDDcd000182.07E-26104161No hitNo description
PROSITE profilePS5103222.036104161IPR001471AP2/ERF domain
SuperFamilySSF541712.16E-20104162IPR016177DNA-binding domain
PRINTSPR003675.8E-7105116IPR001471AP2/ERF domain
PRINTSPR003675.8E-7127143IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MCGGAILAEL VPARVHRPLT VATLWPAADS GATAGGKRKA ADVDELETVT DDEEFEAEFQ  60
LFVDDDEPSP AASPESGGRR SRAAPSPAVS GRSVCTSPAP RVNKYRGVRY RRSGRWAAEI  120
RDPRQGRRAW LGTFCSAEEA ARAYDREARR IRGKSARLNF PLLDEGRRQR RTAPAPAMAI  180
DLNLPAVSDD DTMDADDDSD DAHRSAMGGE AVQSTLARIK ELITQQGPHG ERIVPELKMN  240
GAAGALQYAA LIAECSRQME GIAALRRDLE TRERQLVRLV SNVMLR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-15105162664ATERF1
3gcc_A2e-15105162664ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.75340.0callus
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9NG798700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0370716e-69BT037071.1 Zea mays full-length cDNA clone ZM_BFb0153L12 mRNA, complete cds.
GenBankKJ7275486e-69KJ727548.1 Zea mays clone pUT5408 AP2-EREBP transcription factor (EREB179) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025796393.11e-157ethylene-responsive transcription factor RAP2-12-like
TrEMBLA0A3L6SIM61e-170A0A3L6SIM6_PANMI; Ethylene-responsive transcription factor RAP2-12-like
STRINGPavir.Ia04390.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP136642229
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53910.31e-17related to AP2 12