PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9NG812000.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family B3
Protein Properties Length: 237aa    MW: 26805.8 Da    PI: 9.2978
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9NG812000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B353.35e-17136226199
                          EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                          f+k++++s+v +  +l lp +f+++++ k  ++  +tl de+ ++++ ++    ++++  l++GW +F+  +gL++gD vvF+l++ ++f
  Pavir.9NG812000.1.p 136 FVKAMLHSHVVRGFWLGLPSHFCDTYMPK--QDSIITLVDEKDEEFDTNY--LAYKKG--LSGGWAGFAICHGLQDGDAVVFQLIKPTTF 219
                          89************************744..5669***************..555555..9***********************986777 PP

                          ..EEEEE-S CS
                   B3  91 elvvkvfrk 99 
                            +v+++r+
  Pavir.9NG812000.1.p 220 --KVHIIRA 226
                          ..9999885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.1E-19127226IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.71E-24129226IPR015300DNA-binding pseudobarrel domain
CDDcd100177.48E-27134225No hitNo description
SMARTSM010193.3E-18136227IPR003340B3 DNA binding domain
PfamPF023623.2E-15136226IPR003340B3 DNA binding domain
PROSITE profilePS5086311.843136227IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MEVVVKQGMS AYEAARERTV LENKRKMEAL NLRHLAAAIK EAPKTPSPMQ KRRRLIEYAV  60
VVPSPPRRSR RLANLPEVKY AETAPHSADR MIRSPRRPTA RIYLASRGSI SMKARMEAER  120
KAEELESQLD PEFPSFVKAM LHSHVVRGFW LGLPSHFCDT YMPKQDSIIT LVDEKDEEFD  180
TNYLAYKKGL SGGWAGFAIC HGLQDGDAVV FQLIKPTTFK VHIIRAASDD HSEEDE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15054KRRRL
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9NG812000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0873000.0BT087300.1 Zea mays full-length cDNA clone ZM_BFb0032O11 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025797698.11e-162B3 domain-containing protein Os03g0184500-like
SwissprotQ10QS91e-137Y3845_ORYSJ; B3 domain-containing protein Os03g0184500
TrEMBLA0A2S3IUR61e-161A0A2S3IUR6_9POAL; Uncharacterized protein
STRINGSi037266m1e-154(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP175638103
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.16e-49B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]