PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.9NG812000.2.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

Protein Properties

Length: 236aa MW: 26677.6 Da PI: 9.2978

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.9NG812000.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	53.3	5e-17	135	225	1	99
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 f+k++++s+v + +l lp +f+++++ k ++ +tl de+ ++++ ++ ++++ l++GW +F+ +gL++gD vvF+l++ ++f Pavir.9NG812000.2.p 135 FVKAMLHSHVVRGFWLGLPSHFCDTYMPK--QDSIITLVDEKDEEFDTNY--LAYKKG--LSGGWAGFAICHGLQDGDAVVFQLIKPTTF 218 89**********************744..5669***********..555555..9*********************986777 PP ..EEEEE-S CS B3 91 elvvkvfrk 99 +v+++r+ Pavir.9NG812000.2.p 219 --KVHIIRA 225 ..9999885 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	1.1E-19	126	225	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	4.71E-24	128	225	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	7.33E-27	133	224	No hit	No description
PROSITE profile	PS50863	11.843	135	226	IPR003340	B3 DNA binding domain
Pfam	PF02362	3.2E-15	135	225	IPR003340	B3 DNA binding domain
SMART	SM01019	3.3E-18	135	226	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 236 aa Download sequence Send to blast
MEVVVKQGMS AYEAARERTV LENKRKMEAL NLRHLAAAIK EAPKTPSPMK RRRLIEYAVV 60 VPSPPRRSRR LANLPEVKYA ETAPHSADRM IRSPRRPTAR IYLASRGSIS MKARMEAERK 120 AEELESQLDP EFPSFVKAML HSHVVRGFWL GLPSHFCDTY MPKQDSIITL VDEKDEEFDT 180 NYLAYKKGLS GGWAGFAICH GLQDGDAVVF QLIKPTTFKV HIIRAASDDH SEEDE*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	49	53	KRRRL

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.9NG812000.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT087300	0.0	BT087300.1 Zea mays full-length cDNA clone ZM_BFb0032O11 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025797698.1	1e-161	B3 domain-containing protein Os03g0184500-like
Swissprot	Q10QS9	1e-136	Y3845_ORYSJ; B3 domain-containing protein Os03g0184500
TrEMBL	A0A2S3IUR6	1e-160	A0A2S3IUR6_9POAL; Uncharacterized protein
STRING	Si037266m	1e-153	(Setaria italica)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G42700.1	4e-49	B3 family protein

Link Out ? help Back to Top
Phytozome	Pavir.9NG812000.2.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]