PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9NG830300.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family FAR1
Protein Properties Length: 174aa    MW: 19111.4 Da    PI: 6.5136
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9NG830300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR158.32.5e-1891170290
                 FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                          +Yn+YA ++GF +rks  kk+ ++g+i++++ v s +g+++++++k        a+trtgC+a+++ + +++g+w v+k+ l+HnH la
  Pavir.9NG830300.1.p  91 MYNTYADKIGFIIRKSDVKKR-EDGTIYNKHIVYSSQGYPRTKSSK--------ATTRTGCNARVQFSVSREGVWTVQKVLLDHNHYLA 170
                          8**************998876.9999*************9998766........9*******************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.9E-1591170IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    Send to blast
MAGGSQEDET TMPSSHPTPL LVPVVHDHGD FVGDIGIEGK QITQVVQNTE SIIAEAIPNK  60
TTDEVADKVT QTLIVPEVGM SFESEKAAWT MYNTYADKIG FIIRKSDVKK REDGTIYNKH  120
IVYSSQGYPR TKSSKATTRT GCNARVQFSV SREGVWTVQK VLLDHNHYLA SPN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9NG830300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012703729.12e-51protein FAR1-RELATED SEQUENCE 5-like
TrEMBLB9F8B19e-48B9F8B1_ORYSJ; Uncharacterized protein
TrEMBLT1MNQ53e-49T1MNQ5_TRIUA; Uncharacterized protein
STRINGTRIUR3_19482-P14e-50(Triticum urartu)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G59470.27e-18FAR1 family protein