PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.9NG841200.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

HSF

Protein Properties

Length: 423aa MW: 46792.6 Da PI: 5.1588

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.9NG841200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	108.1	6.6e-34	50	142	2	103
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 Fl+k+y++++d++++ +isw + g sfv++d++ f++++Lp++Fkh++f+SF+RQLn+YgF+kv+ ++ we++++ F k++k Pavir.9NG841200.1.p 50 FLTKVYDMVSDPATDAVISWGAGGGSFVIWDSHAFERDLLPRHFKHNHFTSFIRQLNTYGFHKVDPDR---------WEWANEGFVKDQK 130 9**************************************************************999.........********* PP XXXXXXXXXXXX CS HSF_DNA-bind 92 ellekikrkkse 103 +ll++ikrkk++ Pavir.9NG841200.1.p 131 HLLKTIKRKKKS 142 *******986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46785	1.16E-33	46	139	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	2.2E-54	46	139	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Gene3D	G3DSA:1.10.10.10	3.6E-36	47	139	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF00447	4.4E-30	50	139	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	2.2E-17	50	73	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	2.2E-17	88	100	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	2.2E-17	101	113	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 423 aa Download sequence Send to blast
MGSKKRSPQH PASPASGEVA GDVGAPPAGK APPAAAPVGV VPKPPDVAPF LTKVYDMVSD 60 PATDAVISWG AGGGSFVIWD SHAFERDLLP RHFKHNHFTS FIRQLNTYGF HKVDPDRWEW 120 ANEGFVKDQK HLLKTIKRKK KSAQDATSDL QPAPVKTAPG TENIEIGKYG GLEKEVETLK 180 RDKALLMQQL VDLRQYQQSS SLEVQNLIQR LHVMEQNQQQ MMALLAIVVQ NPNFLNQLVQ 240 QQHRSNWWND DGSRKRRFRA LEQGPVADQG TSVAGAQIIQ YHPPIPETSN QVISVNGAFA 300 PTIAQPVSSP ETAMPMDVET TSNRVDPLAS TGDLFTNTFA LSGLDDMFLG CEIEDILASE 360 QDFEMGEQQI SQVEPPLTVE DYTEYPVFHT PQLELEQQPQ DCQMEAQRGH KNPQYADVIT 420 KA*

Sequence ? help Back to Top

Protein Sequence Length: 423 aa Download sequence Send to blast

MGSKKRSPQH PASPASGEVA GDVGAPPAGK APPAAAPVGV VPKPPDVAPF LTKVYDMVSD  60
PATDAVISWG AGGGSFVIWD SHAFERDLLP RHFKHNHFTS FIRQLNTYGF HKVDPDRWEW  120
ANEGFVKDQK HLLKTIKRKK KSAQDATSDL QPAPVKTAPG TENIEIGKYG GLEKEVETLK  180
RDKALLMQQL VDLRQYQQSS SLEVQNLIQR LHVMEQNQQQ MMALLAIVVQ NPNFLNQLVQ  240
QQHRSNWWND DGSRKRRFRA LEQGPVADQG TSVAGAQIIQ YHPPIPETSN QVISVNGAFA  300
PTIAQPVSSP ETAMPMDVET TSNRVDPLAS TGDLFTNTFA LSGLDDMFLG CEIEDILASE  360
QDFEMGEQQI SQVEPPLTVE DYTEYPVFHT PQLELEQQPQ DCQMEAQRGH KNPQYADVIT  420
KA*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ldu_A	3e-23	44	143	14	124	Heat shock factor protein 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.9NG841200.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT043189	0.0	BT043189.1 Zea mays full-length cDNA clone ZM_BFc0119D19 mRNA, complete cds.
GenBank	EU960909	0.0	EU960909.1 Zea mays clone 229513 heat shock factor protein HSF8 mRNA, complete cds.
GenBank	JX428499	0.0	JX428499.1 Zea mays subsp. mays clone pUT3097 HSF14 HSF type transcription factor mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025795547.1	0.0	heat stress transcription factor A-9-like
Swissprot	Q10PR4	1e-177	HSFA9_ORYSJ; Heat stress transcription factor A-9
TrEMBL	A0A2S3ISS5	0.0	A0A2S3ISS5_9POAL; Uncharacterized protein
STRING	Pavir.Ia04008.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP11494	30	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G17750.1	1e-68	heat shock factor 1

Link Out ? help Back to Top
Phytozome	Pavir.9NG841200.1.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Chauhan H,Khurana N,Agarwal P,Khurana P Heat shock factors in rice (Oryza sativa L.): genome-wide expression analysis during reproductive development and abiotic stress. Mol. Genet. Genomics, 2011. 286(2): p. 171-87 [PMID:21792744]