PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9NG854300.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 190aa    MW: 20968.7 Da    PI: 6.1422
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9NG854300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH19.51.7e-06143170330
                          HHHHHHHHHHHHHHHHHHHHHHCTSCCC CS
                  HLH   3 rahnerErrRRdriNsafeeLrellPka 30 
                          + h ++Er+RR+++ + f  L +++P +
  Pavir.9NG854300.1.p 143 QEHVIAERKRREKLQQQFVALATIVPDL 170
                          5799**********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.7E-6143171IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.8E-6143175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MDELNLWRSH PDLEDELACM YGGQQDEHAG MQQHFAERLP EQQQYYTPPT PMAPPSRPNP  60
ICPSQPHQGS SFPGIGVPAL PPPILPFRAL AVNSDPGQPS SSSILSFGGQ PPSTLNFSGG  120
DWPDGIEAVQ VPERRSRAHW NTQEHVIAER KRREKLQQQF VALATIVPDL TKVHAMSSLL  180
SMLFFRATL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1148153ERKRRE
2149154RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9NG854300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025798093.11e-81transcription factor bHLH18-like
TrEMBLA0A2S3ISN43e-80A0A2S3ISN4_9POAL; Uncharacterized protein
TrEMBLA0A2T7CFI23e-80A0A2T7CFI2_9POAL; Uncharacterized protein
STRINGPavir.J22937.1.p1e-98(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP64013149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.13e-10bHLH family protein