PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.J008500.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 401aa    MW: 42461.6 Da    PI: 4.2194
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.J008500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.86.4e-1952101255
                AP2   2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                        ++ GVr+++ +grWvAeI+d      ++ r++lg+f+taeeAa+a+++a+  l+g
  Pavir.J008500.1.p  52 RFVGVRQRP-SGRWVAEIKDtI----QKIRVWLGTFDTAEEAARAYDEAACLLRG 101
                        789******.7*********33....35**********************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.91E-3051108No hitNo description
SuperFamilySSF541713.14E-1952109IPR016177DNA-binding domain
PfamPF008471.0E-1352101IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.5E-2752108IPR001471AP2/ERF domain
SMARTSM003801.7E-3652115IPR001471AP2/ERF domain
PROSITE profilePS5103219.59952109IPR001471AP2/ERF domain
PRINTSPR003675.8E-85364IPR001471AP2/ERF domain
PRINTSPR003675.8E-87591IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 401 aa     Download sequence    Send to blast
MARKRKASDP IDIEVVGNDD VLNSPPPLPS TDACAWASVV AAAQQQQRGR KRFVGVRQRP  60
SGRWVAEIKD TIQKIRVWLG TFDTAEEAAR AYDEAACLLR GSNTRTNFWP RPSPATAAAH  120
PVQPPPPPAV AVASSPAPAL PPKVTNLLLL RLRARNQQLY SVSATAAQQE AALLQGPLCE  180
GTYGGGGDGD GEECAFQVDD FLSYDCGSSD GTSSQEMDDD EEEEEELDFQ FMDQQHAASP  240
AAGCEGGLCS PFDVVAAELG GEVEADGGEP ESAVQELMRR RMDYERKISA SLYALSGVSE  300
CLRMRHGDGA AAAAGVRDQL TGLREACRKK QRDEAQQQHQ EQAPSPEPEA AEDGNGKAAQ  360
EECSAGSGSP EATSSSSEAS DGDGNSDVLL WSSLDLAPIC *
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.J008500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025809285.10.0ethylene-responsive transcription factor ERF118-like
TrEMBLA0A2T7EIJ50.0A0A2T7EIJ5_9POAL; Uncharacterized protein
STRINGPavir.J28133.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP54823052
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.14e-22related to AP2 11