PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.J011200.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 215aa    MW: 23182.2 Da    PI: 8.2591
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.J011200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY105.13.8e-331067259
                       --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY  2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59
                       +Dgy+WrKYGqK vk+s+fprsYYrCt ++C+vkk+vers++dp+vv++tYeg+H h+
  Pavir.J011200.1.p 10 EDGYRWRKYGQKAVKNSPFPRSYYRCTNSKCTVKKRVERSSDDPSVVITTYEGQHCHH 67
                       8******************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.8E-32268IPR003657WRKY domain
SuperFamilySSF1182902.88E-28367IPR003657WRKY domain
PROSITE profilePS5081129.746469IPR003657WRKY domain
SMARTSM007748.6E-39968IPR003657WRKY domain
PfamPF031062.2E-261067IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MTKSDVDHLE DGYRWRKYGQ KAVKNSPFPR SYYRCTNSKC TVKKRVERSS DDPSVVITTY  60
EGQHCHHTVT FPRAAHLHAL AGYMAFSAAH HHHHHLLYSA SNDDHLPPPL LQQHPTAAAQ  120
QQSAAALITT SGGDSLACMP AMSLLRPPLH CNNQELLAAT YPLSSAMMTM PAVASSLAVS  180
TQSSSPMTAV SSSSPAAVDK GLLDDMVPPA MRHG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-26166974Probable WRKY transcription factor 4
2lex_A1e-26166974Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.J011200.1.p
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2409582e-74AK240958.1 Oryza sativa Japonica Group cDNA, clone: J065045F23, full insert sequence.
GenBankAY3418582e-74AY341858.1 Oryza sativa (japonica cultivar-group) WRKY18 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025803236.19e-99probable WRKY transcription factor 48
TrEMBLA0A3L6QQ891e-102A0A3L6QQ89_PANMI; Uncharacterized protein
STRINGPavir.J09516.1.p1e-157(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21253796
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69310.25e-48WRKY DNA-binding protein 57