PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.J019300.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 225aa    MW: 24368.7 Da    PI: 12.1877
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.J019300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.22.6e-1255100454
                        HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                        +h e+Er+RR+++N +f  Lr  +P+       +++Ka+ L  A  YI +L
  Pavir.J019300.1.p  55 SHVEAERQRREKLNRRFCDLRAAVPTV-----SRMDKASLLADAAAYIAEL 100
                        89************************6.....49**************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.28851100IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.2E-1653119IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.53E-1154104No hitNo description
PfamPF000109.6E-1054100IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.6E-1655114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.6E-1057106IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
SSPCSRRRLS RRRLLSRRRR RSRSRSRAPR SRRRRSGRGS GGPEARARPE APTVSHVEAE  60
RQRREKLNRR FCDLRAAVPT VSRMDKASLL ADAAAYIAEL RARVARLEAE ARRAAAARWE  120
PVVAASRGGA PPGGAPPGRG DEAVEVRMLG PDAASVRATS AAPHASARLM GALRSLELHV  180
QHACVTRVHG LTVQDVVVDV PAQLQDDDGL RAALVQVLQE QDSG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A1e-2054110763Transcription factor MYC2
5gnj_B1e-2054110763Transcription factor MYC2
5gnj_E1e-2054110763Transcription factor MYC2
5gnj_F1e-2054110763Transcription factor MYC2
5gnj_G1e-2054110763Transcription factor MYC2
5gnj_I1e-2054110763Transcription factor MYC2
5gnj_M1e-2054110763Transcription factor MYC2
5gnj_N1e-2054110763Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11626RRRRRSRSRSR
21826RRRSRSRSR
31834RRRSRSRSRAPRSRRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.J019300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025804315.11e-87transcription factor MYC2-like
TrEMBLA0A3L6QNX79e-91A0A3L6QNX7_PANMI; Transcription factor MYC2-like
STRINGPavir.J40111.1.p1e-139(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP89333130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17880.11e-15bHLH family protein