PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.J028900.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

G2-like

Protein Properties

Length: 148aa MW: 16294.8 Da PI: 10.674

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.J028900.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	98.8	3.8e-31	19	72	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 pr+rWt +LH++Fv+a++ LGG++kAtPk il++m+ kgLt++hvkSHLQ+YR Pavir.J028900.1.p 19 PRMRWTADLHRSFVRAIDCLGGQDKATPKLILQFMGAKGLTISHVKSHLQMYRA 72 9****************************************************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.6E-29	15	73	IPR009057	Homeodomain-like
PROSITE profile	PS51294	9.442	15	75	IPR017930	Myb domain
SuperFamily	SSF46689	4.3E-16	16	72	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.4E-23	19	72	IPR006447	Myb domain, plants
Pfam	PF00249	1.3E-7	20	71	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 148 aa Download sequence Send to blast
MGGGGKNGDV RKYIRSKEPR MRWTADLHRS FVRAIDCLGG QDKATPKLIL QFMGAKGLTI 60 SHVKSHLQMY RAARLGGARR GMQAAQLQRR HSCAGDEQGP KEFLCPRLKR ARMGTAAVYE 120 SLQGSHGISE PRTAAAGSLY CVDDYMQS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	1e-19	20	74	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-19	20	74	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-19	20	74	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-19	20	74	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.J028900.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU961920	2e-88	EU961920.1 Zea mays clone 239042 mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004976515.1	2e-86	protein PHR1-LIKE 3 isoform X1
Refseq	XP_022683888.1	1e-86	protein PHR1-LIKE 3 isoform X2
Swissprot	Q700D9	3e-28	MYBF_ARATH; Putative Myb family transcription factor At1g14600
TrEMBL	A0A2T7CYR3	2e-85	A0A2T7CYR3_9POAL; Uncharacterized protein
TrEMBL	A0A2T7CYR7	2e-85	A0A2T7CYR7_9POAL; Uncharacterized protein
STRING	Pavir.J09702.1.p	1e-106	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2966	35	83

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14600.1	2e-28	G2-like family protein

Link Out ? help Back to Top
Phytozome	Pavir.J028900.1.p