PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.J029200.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family GRAS
Protein Properties Length: 209aa    MW: 22276.9 Da    PI: 5.642
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.J029200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS160.61.3e-491181193373
               GRAS 193 eLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl.eaklpreseeri 283
                        +L+vk+gE +aVn+vl+ hrll++++  +    ++L l +s+ + ++ + e+e  +ns+ + +rf++al++y+a fd++ +a+lp +s +r+
  Pavir.J029200.1.p   1 MLHVKRGERVAVNCVLAAHRLLRDDTGAAL--ADFLGLARSTGAAILLLGEHEDALNSGGWEARFARALRFYAAAFDAVdAAGLPDASPARV 90 
                        79********************87777666..89*********************************************9999********* PP

               GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee..sgslvlgWkdrpLvsvSaW 373
                        k E++ ++rei+n+va e a+r+erhe+++ Wr+r+ee GF+++ l++++++qa+++ r+++   y+v+ +   + l+l W d+p+++vSaW
  Pavir.J029200.1.p  91 KAEEM-FAREICNAVAFEDADRFERHESFAGWRRRMEEGGFQNAGLGDREVMQARMIARMFAPGNYSVQAQgnGEGLTLRWLDQPMYTVSAW 181
                        *****.********************************************************555***9664355677************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098521.6021160IPR005202Transcription factor GRAS
PfamPF035144.5E-471181IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MLHVKRGERV AVNCVLAAHR LLRDDTGAAL ADFLGLARST GAAILLLGEH EDALNSGGWE  60
ARFARALRFY AAAFDAVDAA GLPDASPARV KAEEMFAREI CNAVAFEDAD RFERHESFAG  120
WRRRMEEGGF QNAGLGDREV MQARMIARMF APGNYSVQAQ GNGEGLTLRW LDQPMYTVSA  180
WAPVGDGGGG GSTVSASVST TASHSQQS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A9e-204181197374GRAS family transcription factor containing protein, expressed
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.180180.0root| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the shoot apical meristem (SAM) and elongating cells of young seedlings. Expressed in leaf joints, culms, internodes, stems, young panicles, primary roots and lateral roots. {ECO:0000269|PubMed:19220793}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that acts as positivie regulator of brassinosteroid (BR) signaling (PubMed:19220793, PubMed:22685166). Functions downstream of BRI1 and GSK2 to modulate BR responses. Acts as a direct target of GSK2 kinase to mediate BR responses (PubMed:22685166). Involved in feedback inhibition of BR biosynthetic genes. Repressed by BZR1 (PubMed:19220793). {ECO:0000269|PubMed:19220793, ECO:0000269|PubMed:22685166}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.J029200.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by 24-epibrassinolide. {ECO:0000269|PubMed:19220793}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0698760.0BT069876.2 Zea mays full-length cDNA clone ZM_BFb0307D24 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025812393.11e-113protein DWARF AND LOW-TILLERING
SwissprotQ9LWU95e-90DLT_ORYSJ; Protein DWARF AND LOW-TILLERING
TrEMBLA0A0A9GGP81e-126A0A0A9GGP8_ARUDO; Uncharacterized protein
STRINGPavir.J07013.1.p1e-149(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP64043455
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63100.12e-36GRAS family protein
Publications ? help Back to Top
  1. Tong H,Chu C
    Roles of DLT in fine modulation on brassinosteroid response in rice.
    Plant Signal Behav, 2009. 4(5): p. 438-9
    [PMID:19816111]
  2. Li W, et al.
    Identification and characterization of dwarf 62, a loss-of-function mutation in DLT/OsGRAS-32 affecting gibberellin metabolism in rice.
    Planta, 2010. 232(6): p. 1383-96
    [PMID:20830595]
  3. Tong H, et al.
    DWARF AND LOW-TILLERING acts as a direct downstream target of a GSK3/SHAGGY-like kinase to mediate brassinosteroid responses in rice.
    Plant Cell, 2012. 24(6): p. 2562-77
    [PMID:22685166]
  4. Zhang C,Bai MY,Chong K
    Brassinosteroid-mediated regulation of agronomic traits in rice.
    Plant Cell Rep., 2014. 33(5): p. 683-96
    [PMID:24667992]
  5. Yang C,Shen W,He Y,Tian Z,Li J
    OVATE Family Protein 8 Positively Mediates Brassinosteroid Signaling through Interacting with the GSK3-like Kinase in Rice.
    PLoS Genet., 2016. 12(6): p. e1006118
    [PMID:27332964]