PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.J067200.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C3H
Protein Properties Length: 226aa    MW: 23609.6 Da    PI: 10.4514
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.J067200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH27.94.1e-09180206127
                        --S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                        ykt+lC  f ++G C y d C+FaHg+
  Pavir.J067200.1.p 180 YKTKLCEKFEAGGRCAYEDGCTFAHGQ 206
                        9************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.103.1E-16174212IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-9178210IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.911179207IPR000571Zinc finger, CCCH-type
SMARTSM003560.0011179206IPR000571Zinc finger, CCCH-type
PfamPF006422.4E-6180206IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MPRTASDRAR AAQGPRPKCR SARALASNPE PAAAGGLSPP DPIPAATGSA APAPKFAAAC  60
RPGLGSARPG RRLVAPRHKS TASARPAAAR VPLPALGVGF GAERSEAMER DATAAGFGGA  120
SRWKASPDGV IVLPAGSAAP QHARHQRDRE REREQPRENC QGAGVFGDQQ HPEPPEKVFY  180
KTKLCEKFEA GGRCAYEDGC TFAHGQAELR PPLHHFPAPP FDARV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.J067200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A3L6SR091e-113A0A3L6SR09_PANMI; Zinc finger CCCH domain-containing protein 1-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP133642030
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19360.12e-08C3H family protein