PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.J067400.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

MYB_related

Protein Properties

Length: 240aa MW: 26335.9 Da PI: 7.1372

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.J067400.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	25.1	4e-08	99	158	3	44
SS-HHHHHHHHHHHHHTTTT...........-HHHHHHHHT.......TTS-HHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...........tWktIartmg.......kgRtlkqcksrw 44 +W++eE ++l a ++ ++ +Wk++a++++ +R+ kq+k +w Pavir.J067400.1.p 99 NWSEEENDRLFSAWIKHSTDpligtdrkmeyHWKAVAAEFNenapknsHKRSVKQLKTHW 158 8*********************************************88******** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	6.098	96	162	IPR017877	Myb-like domain
Gene3D	G3DSA:1.10.10.60	6.0E-4	96	161	IPR009057	Homeodomain-like
CDD	cd00167	0.00347	99	158	No hit	No description
Pfam	PF13837	2.7E-6	99	166	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 240 aa Download sequence Send to blast
NFNPFGPTGI HPPYGHSPPI FQGVQQPGSW LQAHPPSSQG FYLHESVGPL GATAANRPQS 60 VLQFAHFGEA AANTSFHGTE SKSSDSSEEG EPKMCQRINW SEEENDRLFS AWIKHSTDPL 120 IGTDRKMEYH WKAVAAEFNE NAPKNSHKRS VKQLKTHWGD VKRDITKFSG AYARAMSARS 180 SGQSDDMVLQ TAKELFKGAN KGQGEHAKRT KLSNSEAYTS SSNQDTEGET MSTEVRPEG*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.J067400.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025877399.1	5e-59	uncharacterized protein LOC107276439
TrEMBL	A0A1Z5S8G6	1e-89	A0A1Z5S8G6_SORBI; Uncharacterized protein
STRING	Pavir.Ca02274.1.p	1e-101	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP449	6	10

Link Out ? help Back to Top
Phytozome	Pavir.J067400.1.p