PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.J071100.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 210aa    MW: 22275.2 Da    PI: 8.5882
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.J071100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.67.1e-06811201154
                        HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                HLH  11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         RR++i +++  L++l+P +    sk   Ka +L + ++Y++sL
  Pavir.J071100.1.p  81 VRREKISERMKLLQDLVPGC----SKVTGKAVMLDEIINYVQSL 120
                        6******************9....556**************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.0970120IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.06E-980125IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.7E-980130IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.89E-682120No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MRAKKCKLST DAADDEERKP AAGDAGRSNG KGKEVAAEPP KDYIHVRARR AKPRTATASP  60
SGYAAGEHII HVVADADCLQ VRREKISERM KLLQDLVPGC SKVTGKAVML DEIINYVQSL  120
PFTTAYAAQA NQPCTPAASS LAPPPPVYSL EGSSAPLCYA SSQGATVPSV VTSAKSFVTS  180
STFVNHHIPD HSIEGFQNAN SQVCQHFVR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.J071100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025798622.13e-80transcription factor BHLH089-like
TrEMBLA0A1E5V1J91e-85A0A1E5V1J9_9POAL; Transcription factor bHLH77
STRINGPavir.J14571.1.p1e-153(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP133132532
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.32e-23bHLH family protein