PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.J106800.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

FAR1

Protein Properties

Length: 221aa MW: 26038.7 Da PI: 9.4967

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.J106800.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	76.4	5.7e-24	28	120	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 +fYn+Y + GFsvrks+ + n+ei r++vCs+eg+re ++ + ++k+rr+r+ +r+gCkakl++ +++ +gkw v+++ eH+H+la Pavir.J106800.1.p 28 RFYNTYDLQKGFSVRKSYVEWDGGNQEICLRKMVCSREGFREAKHINrANKKRRPRNISRVGCKAKLVIAQDRkTGKWFVKDFIDEHSHQLA 119 5**************************************999877689999************99998**************98 PP FAR1 91 p 91 p Pavir.J106800.1.p 120 P 120 6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	8.3E-23	28	120	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50212	8.77	183	220	IPR000651	Ras-like guanine nucleotide exchange factor, N-terminal

Sequence ? help Back to Top
Protein Sequence Length: 221 aa Download sequence Send to blast
MADTSVESLS EYHDIVSKQF VSEEERFRFY NTYDLQKGFS VRKSYVEWDG GNQEICLRKM 60 VCSREGFREA KHINRANKKR RPRNISRVGC KAKLVIAQDR KTGKWFVKDF IDEHSHQLAP 120 PDLACLLRSH RRIRDEQKAD IAEMEISGIR KHQIMDILET RYGGYDKVGF IARDIYNFCY 180 RYNQGTIDAG DTKTMISHLG ERQQRDPQFF LSIWLMWRAI *

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.J106800.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002466791.2	5e-95	protein FAR1-RELATED SEQUENCE 5
Refseq	XP_021301886.1	4e-96	protein FAR1-RELATED SEQUENCE 5
Refseq	XP_021321074.1	5e-95	protein FAR1-RELATED SEQUENCE 5
Refseq	XP_024314638.1	4e-95	protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A3L6Q596	1e-99	A0A3L6Q596_PANMI; Uncharacterized protein
STRING	Pavir.J01563.1.p	1e-133	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2449	9	76

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-34	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Pavir.J106800.1.p