PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.J114100.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 287aa    MW: 31015.5 Da    PI: 4.7657
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.J114100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY86.23e-27114174158
                        ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS
               WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58 
                        ++Dg+ WrKYGqKe++gs++pr Y+rCt++   gC+++++v+rs+ dp+v+ itY g+H++
  Pavir.J114100.1.p 114 MEDGFIWRKYGQKEIHGSKYPRLYFRCTYKddhGCTARRQVQRSEADPSVFLITYFGDHTC 174
                        58***************************99999*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.0E-25107174IPR003657WRKY domain
PROSITE profilePS5081122.251109172IPR003657WRKY domain
SuperFamilySSF1182905.49E-24110174IPR003657WRKY domain
SMARTSM007742.2E-37114176IPR003657WRKY domain
PfamPF031065.7E-25115174IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MAMASSAPAC AASDLVAKGR ESAAILQALL VGQQPVVGAV ATPHGLQELT EQILLCCDRA  60
LAALRSGTAE GAAAGGGTRK RKPERVYGQS APPATSSKRT RGERGTRTEK RRTMEDGFIW  120
RKYGQKEIHG SKYPRLYFRC TYKDDHGCTA RRQVQRSEAD PSVFLITYFG DHTCCRGDDE  180
PLAPFVINFG SSSSDGQPSR SSPWPSCDDD GPVVCRSPDL CNSPEEELRS GMADNESEFI  240
DQSTSVPEPT SMSPMDGCLD WTLCDGESSF DIGEFVGQDF DYFGLL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A6e-22112174668OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.J114100.1.p
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7281985e-54KJ728198.1 Zea mays clone pUT6472 WRKY transcription factor (WRKY44) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025809070.11e-168probable WRKY transcription factor 70
TrEMBLA0A2T7ECG01e-173A0A2T7ECG0_9POAL; Uncharacterized protein
STRINGPavir.J41073.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP46632667
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.12e-22WRKY DNA-binding protein 70