PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.J114200.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

WRKY

Protein Properties

Length: 261aa MW: 28777.5 Da PI: 5.9781

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.J114200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	57.4	2.8e-18	114	176	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSST..TEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedp..kvveitYegeHnhe 59 +D ++WrKYG K++ ++e+pr YY+C ++ +Cp+kk v+++++++ ++ +t ++H++e Pavir.J114200.1.p 114 NDRFHWRKYGEKKILKAEYPRLYYKCGYSddhKCPAKKYVQQQSNNGptPLFMVTLINKHTCE 176 79***********************998899******9998862257999999999997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.5E-19	104	176	IPR003657	WRKY domain
SuperFamily	SSF118290	2.88E-18	108	176	IPR003657	WRKY domain
PROSITE profile	PS50811	14.573	108	176	IPR003657	WRKY domain
SMART	SM00774	3.0E-25	113	177	IPR003657	WRKY domain
Pfam	PF03106	9.2E-19	114	176	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 261 aa Download sequence Send to blast
MDAAIQELRR GTRLADLLMQ QVELIPELER RHAAVANVGE ISTAMESSLS LLQSEMERPP 60 SPEVGAVAMA AYSSDGSIGE RNGAVASARR VRHRRGRDGA ELPMKEILTE APENDRFHWR 120 KYGEKKILKA EYPRLYYKCG YSDDHKCPAK KYVQQQSNNG PTPLFMVTLI NKHTCETLFP 180 DEPSSSSTSA SQVLDFTKAS LSPPPVMAAA APGLKKEEED SMSVSMHSYP YDEYLSSSFP 240 MMSPDGDYQV KFSPGPGPGW *

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.J114200.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025808777.1	1e-139	probable WRKY transcription factor 62
TrEMBL	A0A2T7ECG8	1e-138	A0A2T7ECG8_9POAL; Uncharacterized protein
STRING	Pavir.J16737.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP9993	29	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G23810.1	2e-14	WRKY family protein

Link Out ? help Back to Top
Phytozome	Pavir.J114200.1.p