PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.J121100.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

BES1

Protein Properties

Length: 179aa MW: 19550.7 Da PI: 8.651

Description

BES1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.J121100.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF822	126.6	3.1e-39	52	164	2	115
DUF822 2 gsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyr.kgskpleeaeaagssasaspes 92 +s r+pt +ErEnn++RERrRR++aa+i+a LRa+++y lpk+aD+n+Vl+ALc+eAG+ v+dDG++ r +g a+ +s++ ++ s Pavir.J121100.1.p 52 TSLRHPTPRERENNRQRERRRRQVAARIFACLRAHAGYTLPKHADQNDVLRALCAEAGYYVDDDGNVTRlQGVVD--GAAGPRCSSDHQKPS 141 789******************************************************************445444..467777777777777 PP DUF822 93 slqsslkssalaspvesysaspk 115 s + ++++ +l+ p + + ++ Pavir.J121100.1.p 142 SHSGTTEAVTLQQPEQRREEEEE 164 76767777777777766655544 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05687	1.2E-29	54	136	IPR008540	BES1/BZR1 plant transcription factor, N-terminal

Sequence ? help Back to Top
Protein Sequence Length: 179 aa Download sequence Send to blast
MEVGAGRDEV EAAAAAVVAT EVAPVSGRRG CIRSTQGPWT VRRRGRGGGL TTSLRHPTPR 60 ERENNRQRER RRRQVAARIF ACLRAHAGYT LPKHADQNDV LRALCAEAGY YVDDDGNVTR 120 LQGVVDGAAG PRCSSDHQKP SSHSGTTEAV TLQQPEQRRE EEEEAKLSLE LTLSFAYM*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.J121100.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU947756	1e-104	EU947756.1 Zea mays clone 356679 mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004971713.1	8e-77	protein BZR1 homolog 3-like
TrEMBL	A0A368R3Z7	2e-75	A0A368R3Z7_SETIT; Uncharacterized protein
STRING	Pavir.J23744.1.p	1e-127	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP13201	30	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G19350.6	1e-13	BES1 family protein

Link Out ? help Back to Top
Phytozome	Pavir.J121100.1.p