PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.J122500.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family CO-like
Protein Properties Length: 238aa    MW: 25825.5 Da    PI: 8.3258
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.J122500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box16.91.3e-05540537
           zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg...H 37
                        C+ +  + ++ fC  C+  lC  C  + H     H
  Pavir.J122500.1.p  5 ACQSCATHDAIVFCLLCGARLCLPCDAALHAAaglH 40
                       69****999*****************9999556666 PP
2CCT50.67e-18167211144
                CCT   1 ReaallRYkeK.rktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                        Re+a+lRY eK +k+R+F K+i Y+sRKa+A++R+RvKGrF+k++
  Pavir.J122500.1.p 167 RERAKLRYAEKkKKNRRFCKQIMYASRKARADTRKRVKGRFAKAS 211
                        99******9862579***************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.599145IPR000315B-box-type zinc finger
PfamPF062036.6E-12167210IPR010402CCT domain
PROSITE profilePS5101712.352168210IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MPLSACQSCA THDAIVFCLL CGARLCLPCD AALHAAAGLH PRARLCDKCN LAPAALRCDD  60
VTLCAGCAGH GPPASALVAQ YTGCPAPKDL VRIISTETPP QQDALEVWIA DKLLEDDAGQ  120
LMEAGWDVAE ETAKLEKMLS DLSSSSALVA PSQSCLIRTD DKKRQERERA KLRYAEKKKK  180
NRRFCKQIMY ASRKARADTR KRVKGRFAKA STTSQDPHSY NPVHDDPSNT DKGETRS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1161179KKRQERERAKLRYAEKKKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.J122500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025810511.11e-115zinc finger protein CONSTANS-LIKE 12-like
TrEMBLA0A3L6PIK61e-119A0A3L6PIK6_PANMI; Uncharacterized protein
STRINGPavir.J21550.1.p1e-173(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1410966
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G15250.11e-17B-box type zinc finger protein with CCT domain