PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.J124600.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family Trihelix
Protein Properties Length: 256aa    MW: 26951.2 Da    PI: 10.9124
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.J124600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix575.1e-1875159271
           trihelix   2 WtkqevlaLiearremeerlrrgk...............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr 71 
                        Wt +e+l Li+a+r +++r   +                + +++W++v ++++ +g+ rs++qC++kw+nl ++ykk+++ e++ 
  Pavir.J124600.1.p  75 WTLHETLILITAKRLDDDRRAGAVgaahghahgspttprSSEQRWKWVENYCWNHGCLRSQNQCNDKWDNLLRDYKKVRDYESRT 159
                        **************5554444321233444555555665*****************************************99975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.65567146IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.602.5E-468148IPR009057Homeodomain-like
PfamPF138378.0E-1274158No hitNo description
Gene3DG3DSA:1.20.5.6005.6E-4150182IPR012897Potassium channel, voltage dependent, Kv1.4, tandem inactivation domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006813Biological Processpotassium ion transport
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
GO:0005249Molecular Functionvoltage-gated potassium channel activity
GO:0030955Molecular Functionpotassium ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MSANTVAKAA APMSGSSDPS PSSSAAASPL ALLRPHPHAH AHAGHLTPPS PASGGPAPPP  60
PSPASAPRDY RKGNWTLHET LILITAKRLD DDRRAGAVGA AHGHAHGSPT TPRSSEQRWK  120
WVENYCWNHG CLRSQNQCND KWDNLLRDYK KVRDYESRTA AAAAVAGTAA APGGGGGAGA  180
VPSYWSMERH ERKDRNLPTN LAPEVFDALT DVLSRRAARR GGAAIAAAPP PPAPPSPPKP  240
LVAQPAPRRR LPRRF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.J124600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4553260.0AB455326.1 Echinochloa crus-pavonis sh4 homologue gene, complete cds, strain: Ec/01-Ar-01.
GenBankAB4553270.0AB455327.1 Echinochloa crus-pavonis sh4 homologue gene, complete cds, strain: Ec/97-Ar-02.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025826016.19e-85trihelix transcription factor ASR3-like
TrEMBLA0A2T7D1G84e-94A0A2T7D1G8_9POAL; Uncharacterized protein
STRINGPavir.J20189.1.p1e-172(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32943571
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35640.15e-39Trihelix family protein