PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.J125500.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

TCP

Protein Properties

Length: 194aa MW: 19253.6 Da PI: 10.8759

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.J125500.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	110.8	1.9e-34	40	125	9	89
TCP 9 skihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.....eaesssssasnsssg....k 89 +++h+kv+gR+RRvR+++ caar+F+L++eLG+++d++tieWLl+qa+p+i ++tg+++++a ++ +++sss ++ + k Pavir.J125500.1.p 40 KDRHSKVNGRGRRVRMPIVCAARVFQLTRELGLKSDGQTIEWLLRQAEPSILAATGSGTTPAVFVsssapSTSSSSHYHQ----QtvlgK 125 89*******************************************************99999555221111111111111....111221 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	27.009	39	93	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	9.0E-31	39	118	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 194 aa Download sequence Send to blast
PAGAVHGHAR AAAAAAAADG GGAMAVVPAK PVKKEGGGGK DRHSKVNGRG RRVRMPIVCA 60 ARVFQLTREL GLKSDGQTIE WLLRQAEPSI LAATGSGTTP AVFVSSSAPS TSSSSHYHQQ 120 TVLGKRPREE GDAAGAAAAA SAFWAALPAA AADDGGLGLL AAGGAGGGRA HHHHLNLLAA 180 LSGAARRAEE ETR*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.J125500.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FP095725	1e-136	FP095725.1 Phyllostachys edulis cDNA clone: bphyem123a10, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004953208.1	5e-74	transcription factor TCP21-like
Swissprot	Q9FMX2	2e-38	TCP7_ARATH; Transcription factor TCP7
TrEMBL	A0A368PNU6	1e-72	A0A368PNU6_SETIT; Uncharacterized protein
STRING	Pavir.Aa01258.1.p	1e-97	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1941	33	100

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23280.1	4e-33	TCP family protein

Link Out ? help Back to Top
Phytozome	Pavir.J125500.1.p