PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.J134600.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family AP2
Protein Properties Length: 75aa    MW: 8357.43 Da    PI: 12.3477
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.J134600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP221.55.7e-073573235
                AP2  2 gykGVrwdkkrgrWvAeIrdpse.ng....kr.krfslgk 35
                        y+GV++++++gr++A+++d  + +g    k+ k+ ++ +
  Pavir.J134600.1.p 35 AYRGVTRHRWTGRFEAHLWDK-DaRGgprgKKgKQGWCRT 73
                       69******************4.555558764458888765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS510329.1773574IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 75 aa     Download sequence    Send to blast
MAKPRGSAAT DGEPAPKRAR RKSGPRESPS RRSSAYRGVT RHRWTGRFEA HLWDKDARGG  60
PRGKKGKQGW CRTR*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.J134600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0698471e-38BT069847.1 Zea mays full-length cDNA clone ZM_BFb0304K10 mRNA, complete cds.
GenBankKJ7282111e-38KJ728211.1 Zea mays clone pUT6488 AP2-EREBP transcription factor (EREB60) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025820075.12e-30AP2-like ethylene-responsive transcription factor At2g41710
SwissprotA0JPZ87e-15AP2L3_ARATH; AP2-like ethylene-responsive transcription factor At1g79700
TrEMBLA0A2S3I2X85e-29A0A2S3I2X8_9POAL; Uncharacterized protein
TrEMBLA0A3L6RI052e-29A0A3L6RI05_PANMI; Uncharacterized protein
STRINGPavir.J20962.1.p1e-44(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54320.14e-10AP2 family protein