PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.J140600.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB_related
Protein Properties Length: 106aa    MW: 11549.6 Da    PI: 9.5819
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.J140600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.21.6e-072268447
                       S-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding  4 WTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47
                       WT+   +++ +a + +  +   +W+ +ar+mg  +++ +++ ++ ++
  Pavir.J140600.1.p 22 WTQRQNKQFECALAVYDREtpdRWHNVARYMGGAKSADEVRRHFEQL 68
                       *****************88*************999********9775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007171.8E-51871IPR001005SANT/Myb domain
SuperFamilySSF466897.39E-102076IPR009057Homeodomain-like
CDDcd001671.30E-52269No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 106 aa     Download sequence    Send to blast
MASGGGSSSS NSSRGSSSSR GWTQRQNKQF ECALAVYDRE TPDRWHNVAR YMGGAKSADE  60
VRRHFEQLVA DVAQIEAGRV PFPRYAADDD AAAATSSRTK YLKFQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A1e-2312105393RADIALIS
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the micropylar endosperm surrounding globular-stage embryos but no expression was detected elsewhere, including floral tissues. {ECO:0000269|PubMed:17672842}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.J140600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7282462e-94KJ728246.1 Zea mays clone pUT6523 MYB-related transcription factor (MYBR57) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025809060.13e-45protein RADIALIS-like 3
SwissprotQ1A1734e-26RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A3L6SWR01e-46A0A3L6SWR0_PANMI; Uncharacterized protein
STRINGPavir.J17245.1.p3e-72(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27038230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.25e-27RAD-like 6