PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.J158600.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family GATA
Protein Properties Length: 465aa    MW: 49907.6 Da    PI: 9.6662
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.J158600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA41.51.9e-13153184132
               GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrk 32 
                        C +Cg+ +Tp+WR+gp  + tLCnaCG++ + 
  Pavir.J158600.1.p 153 CLQCGAVETPQWRSGPMRSGTLCNACGVRLKA 184
                        89**************************9986 PP
2GATA51.41.5e-16283317135
               GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                        C +Cg+++Tp+WR+gp g +tLCnaCG++yr  +l
  Pavir.J158600.1.p 283 CLHCGSSSTPQWREGPMGRSTLCNACGVRYRQGRL 317
                        99*****************************9886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011412.558147201IPR000679Zinc finger, GATA-type
SuperFamilySSF577164.56E-12147193No hitNo description
SMARTSM004011.5E-9147197IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.3E-12151190IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.07E-9152195No hitNo description
PfamPF003204.6E-11153184IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.651277313IPR000679Zinc finger, GATA-type
SMARTSM004011.8E-15277331IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.23E-13278336No hitNo description
Gene3DG3DSA:3.30.50.106.2E-14281315IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.22E-13282338No hitNo description
PROSITE patternPS003440283308IPR000679Zinc finger, GATA-type
PfamPF003202.3E-14283317IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 465 aa     Download sequence    Send to blast
MATVEEGHKI EPPGLGPIAR RSAATMATGD FTGGGREGEL EGALGYVLSL PAAALPLPVA  60
VSCLDATVPR KARSRPRLRA QPCSWWTFEL PVPAPEEAKD PPPTASAATN PTEVARPPRP  120
PRPRPRVCQA PPPDDPRTPA PAMERPAKRA RRCLQCGAVE TPQWRSGPMR SGTLCNACGV  180
RLKAAGALRE QVHRPPPATA RTVAEPPPES PVSDSSPDGP IWEPGSVPDV YLLRKKPPKQ  240
GRSEAASPSA PAVFLVKNKK TKKKAPKTPR KKPWRPRKSA KRCLHCGSSS TPQWREGPMG  300
RSTLCNACGV RYRQGRLLPE YRPLASPTFE PSEHANRHSQ VLQLHRQRKG QKSQQPLPAE  360
EPRPGDDPTA APACGCGDDP MNVLLPRRWH NKNEYPPTPL HQPQLQPADS LAGDQHVGDM  420
DDSAQGRGGG SSNDPNDAPS SLDSMLLEGP SAPLIVDGDE PLID*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1256271KNKKTKKKAPKTPRKK
2258272KKTKKKAPKTPRKKP
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.J158600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0337272e-97BT033727.1 Zea mays full-length cDNA clone ZM_BFc0117H23 mRNA, complete cds.
GenBankBT0404242e-97BT040424.1 Zea mays full-length cDNA clone ZM_BFc0090I01 mRNA, complete cds.
GenBankBT0687872e-97BT068787.1 Zea mays full-length cDNA clone ZM_BFb0382C16 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004977277.10.0ras-associated and pleckstrin homology domains-containing protein 1 isoform X1
TrEMBLA0A2S3H6860.0A0A2S3H686_9POAL; Uncharacterized protein
STRINGPavir.J37525.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP72732646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60530.15e-27GATA transcription factor 4