PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.J162300.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 246aa    MW: 26155.1 Da    PI: 10.9419
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.J162300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.82.5e-10188217130
                        CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC CS
                HLH   1 rrrahnerErrRRdriNsafeeLrellPka 30 
                        +r++h ++Er+RR+ +N+ ++ Lr+l+P++
  Pavir.J162300.1.p 188 QRMTHIAVERNRRRLMNDHLASLRSLIPSS 217
                        79**************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.32E-8179220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.96E-7186218No hitNo description
Gene3DG3DSA:4.10.280.108.6E-9186217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088810.302187245IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-7188217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MEIYQSKLNR GSTTLYSAGC CCYRSTIFIA LVAPTAATRG GARRGGGLQQ VAVAAAAASG  60
RGSLLVAAVI AAAVMERMQL QGPIASSSLW AADQQAAPST SSQMPFLALL QGAGVVVEDG  120
RKRNAALERA ADLDRLESCV TQAAAAGDPA VALPPATRAE RRRKRPRPRT RAAPPPEKRR  180
KPEEAESQRM THIAVERNRR RLMNDHLASL RSLIPSSYIP RVSHCPCMHG HANICSPIPY  240
PTISV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1160170RRRKRPRPRTR
2162168RKRPRPR
3162180RKRPRPRTRAAPPPEKRRK
4163167KRPRP
5188199RMTHIAVERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.J162300.1.p
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0986951e-78AC098695.2 Oryza sativa Japonica Group chromosome 3 clone OJ1126B12, complete sequence.
GenBankAC2104911e-78AC210491.1 Oryza glaberrima clone OG_BBa0088K23, complete sequence.
GenBankAP0149591e-78AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBankCP0126111e-78CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025798239.14e-53transcription factor bHLH57-like
TrEMBLK7WHF41e-63K7WHF4_MAIZE; BHLH transcription factor (Fragment)
STRINGPavir.J23098.1.p1e-120(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79573344
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46810.11e-12bHLH family protein